Stem-loop osa-MIR818d

Accession

MI0005250

Description

Oryza sativa osa-MIR818d precursor miRNA

Literature search

12 open access papers mention osa-MIR818d
(30 sentences)

Sequence

148134 reads, 466.0 reads per million, 142 experiments

uuccuauuaauuguuacucucucCAUCCCAUAAUAUAAGGgauuuuagagggaugugaucuagauucguaguccgaggaaacaucacauaccucuaaaauccCUUAUAUUAUGGGACGGAGGgaguacuaguuuaggaa
.(((((..(((((.((((((((((.((((((((((((((((((((((((((..((((((.....((((.....)))).....))))))..)))))))))))))))))))))))))).)))))))))).)))))))))).

Structure

u     uu     u          A                          ga      cuaga    u 
 uccua  aauug uacucucucC UCCCAUAAUAUAAGGgauuuuagagg  ugugau     uucg a
 |||||  ||||| |||||||||| ||||||||||||||||||||||||||  ||||||     |||| g
 aggau  uugau augagGGAGG AGGGUAUUAUAUUCccuaaaaucucc  acacua     gagc u
a     --     c          C                          au      caaag    c 

Annotation confidence Medium

Comments

miR818 was misnamed miR580 by Luo et al [1].

Genome context

4: 34969161-34969299 [-]

Mature osa-miR818d-5p

• Accession: MIMAT0056016
• Description: Oryza sativa osa-miR818d-5p mature miRNA
• Sequence: 24 - CAUCCCAUAAUAUAAGG - 40
• Evidence: experimental ; unknown

Mature osa-miR818d-3p

• Accession: MIMAT0004066
• Description: Oryza sativa osa-miR818d-3p mature miRNA
• Sequence: 103 - CUUAUAUUAUGGGACGGAGG - 122
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 16959252
   Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development
   "Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH"
   "FEBS Lett (2006) 580:5111-5116