Stem-loop osa-MIR818e

Accession

MI0005251

Description

Oryza sativa osa-MIR818e precursor miRNA

Literature search

12 open access papers mention osa-MIR818e
(24 sentences)

Sequence

366700 reads, 1582.0 reads per million, 142 experiments

ccccguccuauaauAUAAGGGAUUUUGAGUUUUUgcuugcacuguuugaccacucgucuuauuuaaauuuuuuuuggaauuauuauuauuuuugacuuauuuuauuauccaaaguacuuuaagcauaacuuuucguuuuuuauauuuguacaaauuuuuugaauaaaacgaguggucaaacaauacaaacaaaaacuuaaAAUCCCUUAUAUUAUGGGACGGagg
(((((((((((((((((((((((((((((((((((.(((...(((((((((((((((.(((((((((.....((((((.............................))))))((((.........(((.....)))..........))))......))))))))).)))))))))))))))...))).))))))))))))))))))))))))))))))))).))

Structure

  -                                 c   cac               c         ---------------------------------------uuuuu      auuauuauuauuu 
cc ccguccuauaauAUAAGGGAUUUUGAGUUUUUg uug   uguuugaccacucgu uuauuuaaa                                            uuugga             u
|| ||||||||||||||||||||||||||||||||| |||   ||||||||||||||| |||||||||                                            ||||||             u
gg GGCAGGGUAUUAUAUUCCCUAAaauucaaaaac aac   acaaacuggugagca aauaaguuu                                            aaaccu             g
  a                                 a   aua               a         uuuaaacauguuuauauuuuuugcuuuucaauacgaauuucaug      auuauuuuauuca 

Annotation confidence Low

Comments

miR818 was misnamed miR580 by Luo et al [1].

Genome context

7: 28154432-28154656 [-]

Mature osa-miR818e-5p

• Accession: MIMAT0056017
• Description: Oryza sativa osa-miR818e-5p mature miRNA
• Sequence: 15 - AUAAGGGAUUUUGAGUUUUU - 34
• Evidence: experimental ; unknown

Mature osa-miR818e-3p

• Accession: MIMAT0004067
• Description: Oryza sativa osa-miR818e-3p mature miRNA
• Sequence: 201 - AAUCCCUUAUAUUAUGGGACGG - 222
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 16959252
   Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development
   "Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH"
   "FEBS Lett (2006) 580:5111-5116