Dead hairpin entry

Stem-loop osa-MIR818e

Accession

MI0005251

Description

Oryza sativa osa-MIR818e precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

12 open access papers mention osa-MIR818e
(24 sentences)

Sequence

366700 reads, 1582.0 reads per million, 142 experiments

ccccguccuauaauAUAAGGGAUUUUGAGUUUUUgcuugcacuguuugaccacucgucuuauuuaaauuuuuuuuggaauuauuauuauuuuugacuuauuuuauuauccaaaguacuuuaagcauaacuuuucguuuuuuauauuuguacaaauuuuuugaauaaaacgaguggucaaacaauacaaacaaaaacuuaaAAUCCCUUAUAUUAUGGGACGGagg
(((((((((((((((((((((((((((((((((((.(((...(((((((((((((((.(((((((((.....((((((.............................))))))((((.........(((.....)))..........))))......))))))))).)))))))))))))))...))).))))))))))))))))))))))))))))))))).))

Structure

  -                                 c   cac               c         ---------------------------------------uuuuu      auuauuauuauuu 
cc ccguccuauaauAUAAGGGAUUUUGAGUUUUUg uug   uguuugaccacucgu uuauuuaaa                                            uuugga             u
|| ||||||||||||||||||||||||||||||||| |||   ||||||||||||||| |||||||||                                            ||||||             u
gg GGCAGGGUAUUAUAUUCCCUAAaauucaaaaac aac   acaaacuggugagca aauaaguuu                                            aaaccu             g
  a                                 a   aua               a         uuuaaacauguuuauauuuuuugcuuuucaauacgaauuucaug      auuauuuuauuca