Stem-loop osa-MIR821a

Accession

MI0005266

Description

Oryza sativa osa-MIR821a precursor miRNA

Literature search

1 open access papers mention osa-MIR821a
(5 sentences)

Sequence

67437 reads, 358.0 reads per million, 142 experiments

gauaucagcugaaaAAGUCAUCAACAAAAAAGUUGAAUaacucaucaagaucuaaaacuuuuauuuuggucauuucuucauacgacaaagugauaguaacauuguucacagaauugacauaucucuuaucugguuuuauaaacuauaacacauauauguaaaauuugugaauaauauuacuaacauuucgucagaugaagaaauaaaaaaauaaaaguuauagaucuugaugaguuauucaacUUUGUUGUUGAUGACUUUUUCaauugaaauc
(((.((((.((((((((((((((((((.((((((((((((((((((((((((((.((((((((((((....((((((((((..(((.(((((.((((((.((((((((((((.((.((((((........((((((...))))))........)))))).)).)))))))))))).)))))).))))).)))..))))))))))...)))))))))))).)))))))))))))))))))))))))).)))))))))))))))))).)))).)))

Structure

   a    c                  A                          a            gguc          ac   a     a      c            a  g      cucuuauc      u 
gau ucag ugaaaAAGUCAUCAACAA AAAGUUGAAUaacucaucaagaucua aacuuuuauuuu    auuucuucau  gac aagug uaguaa auuguucacaga uu acauau        ugguuu  
||| |||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    ||||||||||  ||| ||||| |||||| |||||||||||| || ||||||        |||||| a
cua aguu aCUUUUUCAGUAGUUGUU UUUcaacuuauugaguaguucuagau uugaaaauaaaa    uaaagaagua  cug uuuac aucauu uaauaaguguuu aa uguaua        aucaaa  
   a    a                  G                          a            -aaa          ga   c     a      a            a  a      uacacaau      u 

Annotation confidence Medium

Comments

miR821 was misnamed miR584 by Luo et al [1].

Genome context

3: 22974225-22974498 [+]

Mature osa-miR821a-5p

• Accession: MIMAT0004082
• Description: Oryza sativa osa-miR821a-5p mature miRNA
• Sequence: 15 - AAGUCAUCAACAAAAAAGUUGAAU - 38
• Evidence: experimental ; cloned [1], Northern [1]

Mature osa-miR821a-3p

• Accession: MIMAT0056021
• Description: Oryza sativa osa-miR821a-3p mature miRNA
• Sequence: 244 - UUUGUUGUUGAUGACUUUUUC - 264
• Evidence: experimental ; unknown

References

1. PubMed ID: 16959252
   Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development
   "Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH"
   "FEBS Lett (2006) 580:5111-5116