Dead hairpin entry

Stem-loop osa-MIR821a

Accession

MI0005266

Description

Oryza sativa osa-MIR821a precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

1 open access papers mention osa-MIR821a
(5 sentences)

Sequence

67437 reads, 358.0 reads per million, 142 experiments

gauaucagcugaaaAAGUCAUCAACAAAAAAGUUGAAUaacucaucaagaucuaaaacuuuuauuuuggucauuucuucauacgacaaagugauaguaacauuguucacagaauugacauaucucuuaucugguuuuauaaacuauaacacauauauguaaaauuugugaauaauauuacuaacauuucgucagaugaagaaauaaaaaaauaaaaguuauagaucuugaugaguuauucaacUUUGUUGUUGAUGACUUUUUCaauugaaauc
(((.((((.((((((((((((((((((.((((((((((((((((((((((((((.((((((((((((....((((((((((..(((.(((((.((((((.((((((((((((.((.((((((........((((((...))))))........)))))).)).)))))))))))).)))))).))))).)))..))))))))))...)))))))))))).)))))))))))))))))))))))))).)))))))))))))))))).)))).)))

Structure

   a    c                  A                          a            gguc          ac   a     a      c            a  g      cucuuauc      u 
gau ucag ugaaaAAGUCAUCAACAA AAAGUUGAAUaacucaucaagaucua aacuuuuauuuu    auuucuucau  gac aagug uaguaa auuguucacaga uu acauau        ugguuu  
||| |||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    ||||||||||  ||| ||||| |||||| |||||||||||| || ||||||        |||||| a
cua aguu aCUUUUUCAGUAGUUGUU UUUcaacuuauugaguaguucuagau uugaaaauaaaa    uaaagaagua  cug uuuac aucauu uaauaaguguuu aa uguaua        aucaaa  
   a    a                  G                          a            -aaa          ga   c     a      a            a  a      uacacaau      u