Stem-loop osa-MIR821b

Accession

MI0005267

Description

Oryza sativa osa-MIR821b precursor miRNA

Literature search

1 open access papers mention osa-MIR821b
(6 sentences)

Sequence

15564 reads, 76.0 reads per million, 142 experiments

cuaaaugauuucaauugaaaAAGUCAUCAACAAAAAAGUUGAAUaacuuaucaagaucuaaaacuuuuauuuuuguuauuucuucauccgacgaaauguuaguaauauuauucacaaauuuuacauauauguguuaaaguuuauaaaaccagauaagagauaugacaauuuuauaaauaauguuaccaucacuuugucguaugaagaaauaaccacaauaaaaguuuuagaucuugaagaguuauucaacUUUGUUGUUGAUGACUUUUUCaguugauaucauuuag
(((((((((.(((((((((((((((((((((((.(((((((((((((((.(((((((((((((((((((((...(((((((((((((.(((((((.((...(((((((((((...(((((.(.(((((...((((...((((...))))..))))....)))))).)))))....)))))))))))...)).))))))).)))))))))))))...))))))))))))))))))))).))))))))))))))).))))))))))))))))))))))).)))))))))

Structure

         u                       A               a                     uuu             c       a  uua           -cac     u a     -aug    aaa    a 
cuaaaugau ucaauugaaaAAGUCAUCAACAA AAAGUUGAAUaacuu ucaagaucuaaaacuuuuauu   guuauuucuucau cgacgaa ug   guaauauuauu    aaauu u cauau    uguu   guuu  
||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||   ||||||||||||| ||||||| ||   |||||||||||    ||||| | |||||    ||||   |||| u
gauuuacua aguugaCUUUUUCAGUAGUUGUU UUUcaacuuauugag aguucuagauuuugaaaauaa   caauaaagaagua gcuguuu ac   cauuguaauaa    uuuaa a guaua    auag   caaa  
         u                       G               a                     cac             u       c  uac           auau     c -     gaga    -ac    a 

Annotation confidence Medium

Comments

miR821 was misnamed miR584 by Luo et al [1].

Genome context

7: 16417225-16417511 [+]

Mature osa-miR821b-5p

• Accession: MIMAT0004083
• Description: Oryza sativa osa-miR821b-5p mature miRNA
• Sequence: 21 - AAGUCAUCAACAAAAAAGUUGAAU - 44
• Evidence: experimental ; cloned [1], Northern [1]

Mature osa-miR821b-3p

• Accession: MIMAT0056022
• Description: Oryza sativa osa-miR821b-3p mature miRNA
• Sequence: 251 - UUUGUUGUUGAUGACUUUUUC - 271
• Evidence: experimental ; unknown

References

1. PubMed ID: 16959252
   Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development
   "Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH"
   "FEBS Lett (2006) 580:5111-5116