Dead hairpin entry

Stem-loop osa-MIR821c

Accession

MI0005268

Description

Oryza sativa osa-MIR821c precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

1 open access papers mention osa-MIR821c
(5 sentences)

Sequence

26469 reads, 131.0 reads per million, 142 experiments

ucaacugaaaAAGUCAUCAACAAAAAAGUUGAAUaacucaucaacaucuaaaacuuuuauuuugguuauuucuucauacgacaaagugauaguaacauuauucacaaaauugacauaacucuuaucugguuuuauaaacuauaacacauauauguaaaauuugugaauaauuuucuaacauuuugucagaugaagaaacaacaaaaauaaaaguuuuagaucuugaugaguuauucaacUUUGUUGUUGAUGACUUUUUCaauuga
((((.((((((((((((((((((.((((((((((((((((((((.((((((((((((((((((.(((.(((((((((..(((((((((.(((.((.((((((((((((.((.(((((.........((((((...)))))).........))))).)).)))))))))))).))))).)))))))))..))))))))).))).)))))))))))))))))).)))))))))))))))))))).)))))))))))))))))).))))

Structure

    c                  A                    c                  g   a         ac         a   u  c            a  g     acucuuauc      u 
ucaa ugaaaAAGUCAUCAACAA AAAGUUGAAUaacucaucaa aucuaaaacuuuuauuuu guu uuucuucau  gacaaagug uag aa auuauucacaaa uu acaua         ugguuu  
|||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||| |||||||||  ||||||||| ||| || |||||||||||| || |||||         |||||| a
aguu aCUUUUUCAGUAGUUGUU UUUcaacuuauugaguaguu uagauuuugaaaauaaaa caa aaagaagua  cuguuuuac auc uu uaauaaguguuu aa uguau         aucaaa  
    a                  G                    c                  a   c         ga         a   -  u            a  a     auacacaau      u