Stem-loop osa-MIR821c

Accession

MI0005268

Description

Oryza sativa osa-MIR821c precursor miRNA

Literature search

1 open access papers mention osa-MIR821c
(5 sentences)

Sequence

26469 reads, 131.0 reads per million, 142 experiments

ucaacugaaaAAGUCAUCAACAAAAAAGUUGAAUaacucaucaacaucuaaaacuuuuauuuugguuauuucuucauacgacaaagugauaguaacauuauucacaaaauugacauaacucuuaucugguuuuauaaacuauaacacauauauguaaaauuugugaauaauuuucuaacauuuugucagaugaagaaacaacaaaaauaaaaguuuuagaucuugaugaguuauucaacUUUGUUGUUGAUGACUUUUUCaauuga
((((.((((((((((((((((((.((((((((((((((((((((.((((((((((((((((((.(((.(((((((((..(((((((((.(((.((.((((((((((((.((.(((((.........((((((...)))))).........))))).)).)))))))))))).))))).)))))))))..))))))))).))).)))))))))))))))))).)))))))))))))))))))).)))))))))))))))))).))))

Structure

    c                  A                    c                  g   a         ac         a   u  c            a  g     acucuuauc      u 
ucaa ugaaaAAGUCAUCAACAA AAAGUUGAAUaacucaucaa aucuaaaacuuuuauuuu guu uuucuucau  gacaaagug uag aa auuauucacaaa uu acaua         ugguuu  
|||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||| |||||||||  ||||||||| ||| || |||||||||||| || |||||         |||||| a
aguu aCUUUUUCAGUAGUUGUU UUUcaacuuauugaguaguu uagauuuugaaaauaaaa caa aaagaagua  cuguuuuac auc uu uaauaaguguuu aa uguau         aucaaa  
    a                  G                    c                  a   c         ga         a   -  u            a  a     auacacaau      u 

Annotation confidence Medium

Comments

miR821 was misnamed miR584 by Luo et al [1].

Genome context

8: 19925129-19925394 [-]

Mature osa-miR821c-5p

• Accession: MIMAT0004084
• Description: Oryza sativa osa-miR821c-5p mature miRNA
• Sequence: 11 - AAGUCAUCAACAAAAAAGUUGAAU - 34
• Evidence: experimental ; cloned [1], Northern [1]

Mature osa-miR821c-3p

• Accession: MIMAT0056023
• Description: Oryza sativa osa-miR821c-3p mature miRNA
• Sequence: 240 - UUUGUUGUUGAUGACUUUUUC - 260
• Evidence: experimental ; unknown

References

1. PubMed ID: 16959252
   Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development
   "Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH"
   "FEBS Lett (2006) 580:5111-5116