Stem-loop mdo-mir-145

Accession

MI0005305

Description

Monodelphis domestica mdo-mir-145 precursor miRNA

Sequence

10734 reads, 209 reads per million, 5 experiments

cucaggGUCCAGUUUUCCCAGGAAUCCCUuagaugcuaagauggggAUUCCUGGAAAUACUGUUCUugag
(((((((..((((.((.((((((((((((.............)))))))))))).)).)))).)))))))

Structure

       UC    U  C            uagau 
cucaggG  CAGU UU CCAGGAAUCCCU     g
|||||||  |||| || ||||||||||||     c
gaguUCU  GUCA AA GGUCCUUAgggg     u
       -U    U  A            uagaa 

Annotation confidence Not enough data

Genome context

chr1: 377173845-377173914 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-145

Mature mdo-miR-145-5p

• Accession: MIMAT0004116
• Description: Monodelphis domestica mdo-miR-145-5p mature miRNA
• Sequence: 7 - GUCCAGUUUUCCCAGGAAUCCCU - 29
• Evidence: experimental ; Microarray [1], PCR [1], Illumina [2]

Mature mdo-miR-145-3p

• Accession: MIMAT0026670
• Description: Monodelphis domestica mdo-miR-145-3p mature miRNA
• Sequence: 47 - AUUCCUGGAAAUACUGUUCU - 66
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45