Stem-loop mdo-mir-187

Accession

MI0005309

Description

Monodelphis domestica mdo-mir-187 precursor miRNA

Sequence

18788 reads, 329 reads per million, 5 experiments

auugugagaccucUGGCUACAACACAGGACACGGGAgcuuuucugaacccUCGUGUCUUGUGUUGCAGCCagaggggcaca
..((((...(((((((((.((((((((((((((((.(.((....)).).)))))))))))))))).)))))))))..))))

Structure

au    aga         A                A c  u 
  ugug   ccucUGGCU CAACACAGGACACGGG g uu u
  ||||   ||||||||| |||||||||||||||| | ||  
  acac   ggagaCCGA GUUGUGUUCUGUGCUc c ag c
--    -gg         C                c a  u 

Annotation confidence Medium

Genome context

chr3: 87606200-87606280 [+]

Mature mdo-miR-187-3p

• Accession: MIMAT0004120
• Description: Monodelphis domestica mdo-miR-187-3p mature miRNA
• Sequence: 51 - UCGUGUCUUGUGUUGCAGCC - 70
• Evidence: experimental ; Microarray [1], PCR [1], Illumina [2]

Mature mdo-miR-187-5p

• Accession: MIMAT0026674
• Description: Monodelphis domestica mdo-miR-187-5p mature miRNA
• Sequence: 14 - UGGCUACAACACAGGACACGGGA - 36
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45