Stem-loop mdo-mir-223

Accession

MI0005324

Description

Monodelphis domestica mdo-mir-223 precursor miRNA

Sequence

303 reads, 8.0 reads per million, 5 experiments

ucuggcccagauccuucagugccacacucCGUGUAUUUGACAAGCUGAGUUGGAcacuccgugucguagagUGUCAGUUUGUCAAAUACCCCAAgugaggcauuugccuag
..((((.(.((....)).).))))((((..(.((((((((((((((((....(((((...)))))........)))))))))))))))).)..))))((((....))))..

Structure

ucuggcccagauccuucagugcca    cC U                ----GUUG     u 
                        cacu  G GUAUUUGACAAGCUGA        GAcac  
                        ||||  | ||||||||||||||||        ||||| c
                        gugA  C CAUAAACUGUUUGACU        cugug  
----------gauccguuuacgga    AC C                GUgagaug     c 

Annotation confidence Medium

Genome context

ref|NC_077235.2|: 12616289-12616399 [-]

Mature mdo-miR-223-5p

• Accession: MIMAT0026682
• Description: Monodelphis domestica mdo-miR-223-5p mature miRNA
• Sequence: 30 - CGUGUAUUUGACAAGCUGAGUUGGA - 54
• Evidence: experimental ; Illumina [2]

Mature mdo-miR-223-3p

• Accession: MIMAT0004135
• Description: Monodelphis domestica mdo-miR-223-3p mature miRNA
• Sequence: 72 - UGUCAGUUUGUCAAAUACCCCAA - 94
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45