Stem-loop mdo-mir-181a-1

Accession

MI0005343

Description

Monodelphis domestica mdo-mir-181a-1 precursor miRNA

Sequence

1491956 reads, 26510 reads per million, 5 experiments

ugAACAUUCAACGCUGUCGGUGAGUuuggaauuaaaaugaaaaCCAUCGACCGUUGAUUGUACC
...(((.((((((..(((((((.((((.............))))))))))))))))).)))...

Structure

ugA   U      CU       A    ggaau 
   ACA UCAACG  GUCGGUG GUuu     u
   ||| ||||||  ||||||| ||||     a
   UGU AGUUGC  CAGCUAC Caaa     a
CCA   U      --       -    aguaa 

Annotation confidence Medium

Genome context

chr2: 99873079-99873142 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-181a-1

Mature mdo-miR-181a-5p

• Accession: MIMAT0004154
• Description: Monodelphis domestica mdo-miR-181a-5p mature miRNA
• Sequence: 3 - AACAUUCAACGCUGUCGGUGAGU - 25
• Evidence: experimental ; Illumina [1]

Mature mdo-miR-181a-1-3p

• Accession: MIMAT0026698
• Description: Monodelphis domestica mdo-miR-181a-1-3p mature miRNA
• Sequence: 44 - CCAUCGACCGUUGAUUGUACC - 64
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45