Stem-loop mdo-mir-24-2

Accession

MI0005365

Description

Monodelphis domestica mdo-mir-24-2 precursor miRNA

Sequence

250516 reads, 4458.0 reads per million, 5 experiments

gccuccuGUGCCUACUGAGCUGAAACACAguugcuuuggauaaacUGGCUCAGUUCAGCAGGAACAGgagucu
..(((((((.(((.(((((((((....(((((..........)))))..))))))))).))).)))))))...

Structure

-gc       G   A         AACA     gcuu 
   cuccuGU CCU CUGAGCUGA    CAguu    u
   ||||||| ||| |||||||||    |||||     
   gagGACA GGA GACUUGACU    GUcaa    g
ucu       A   C         --CG     auag 

Annotation confidence High

Genome context

ref|NC_077229.2|: 443187043-443187115 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mdo-mir-24-2

Mature mdo-miR-24-5p

• Accession: MIMAT0026712
• Description: Monodelphis domestica mdo-miR-24-5p mature miRNA
• Sequence: 8 - GUGCCUACUGAGCUGAAACACA - 29
• Evidence: experimental ; Illumina [2]

Mature mdo-miR-24-3p

• Accession: MIMAT0004175
• Description: Monodelphis domestica mdo-miR-24-3p mature miRNA
• Sequence: 46 - UGGCUCAGUUCAGCAGGAACAG - 67
• Evidence: experimental ; Microarray [1], PCR [1]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45