Stem-loop mdo-mir-25

Accession

MI0005370

Description

Monodelphis domestica mdo-mir-25 precursor miRNA

Sequence

10166 reads, 222.0 reads per million, 5 experiments

ggccaguguugagAGGCGGAGACUUGGGCAAUUGCUgaacucugcccugggCAUUGCACUUGUCUCGGUCUGAcagugcuggc
.((((((((((..((((.(((((..(.(((((.(((.(.........).)))))))).)..))))).))))..))))))))))

Structure

g          ag    G     UU G     U   g acu 
 gccaguguug  AGGC GAGAC  G GCAAU GCU a   c
 ||||||||||  |||| |||||  | ||||| ||| |   u
 cggucgugac  UCUG CUCUG  C CGUUA Cgg u   g
-          AG    G     UU A     -   g ccc 

Annotation confidence High

Genome context

ref|NC_077228.1|: 261536326-261536408 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-25

Mature mdo-miR-25-5p

• Accession: MIMAT0061148
• Description: Monodelphis domestica mdo-miR-25-5p mature miRNA
• Sequence: 14 - AGGCGGAGACUUGGGCAAUUGCU - 36
• Evidence: experimental ; Illumina [1]

Mature mdo-miR-25-3p

• Accession: MIMAT0004179
• Description: Monodelphis domestica mdo-miR-25-3p mature miRNA
• Sequence: 52 - CAUUGCACUUGUCUCGGUCUGA - 73
• Evidence: not_experimental

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72