Stem-loop bmo-mir-31

Accession

MI0005377

Description

Bombyx mori bmo-mir-31 precursor miRNA

Literature search

5 open access papers mention bmo-mir-31
(80 sentences)

Sequence

16636 reads, 3138 reads per million, 3 experiments

gucgagccgguggcugggaaGGCAAGAAGUCGGCAUAGCUGuuugaauaagauacacGGCUGUGUCACUUCGAGCCAGCucaauccgccggcuuucuucaauuucaagauuugcggaugcu
...((((((((((.((((..(((..(((((.(((((((((((.............))))))))))))))))..)))..))))..))))))))))(((.(((.........))).)))....

Structure

------------------------guc          -c    aa   AA     C           uugaa 
                           gagccggugg  uggg  GGC  GAAGU GGCAUAGCUGu     u
                           ||||||||||  ||||  |||  ||||| |||||||||||     a
                           uucggccgcc  acuC  CCG  CUUCA CUGUGUCGGca     a
ucguaggcguuuagaacuuuaacuucu          ua    GA   AG     -           cauag 

Annotation confidence Medium

Genome context

NW_004581778.1: 423738-423858 [+]

Mature bmo-miR-31-5p

• Accession: MIMAT0004213
• Description: Bombyx mori bmo-miR-31-5p mature miRNA
• Sequence: 21 - GGCAAGAAGUCGGCAUAGCUG - 41
• Evidence: experimental ; Northern [2], cloned [3], RT-PCR [4], Illumina [5]

Mature bmo-miR-31-3p

• Accession: MIMAT0015242
• Description: Bombyx mori bmo-miR-31-3p mature miRNA
• Sequence: 58 - GGCUGUGUCACUUCGAGCCAGC - 79
• Evidence: experimental ; Illumina [5]

References

1. PubMed ID: 16972323
   Computational prediction of microRNA genes in silkworm genome
   "Tong CZ, Jin YF, Zhang YZ"
   "J Zhejiang Univ Sci B (2006) 7:806-816


2. PubMed ID: 18507836
   Identification and characteristics of microRNAs from Bombyx mori
   He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
   BMC Genomics (2008) 9:248


3. PubMed ID: 18977439
   Identification of conserved microRNAs in Bombyx mori (silkworm) and regulation of fibroin L chain production by microRNAs in heterologous system
   "Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y"
   "Insect Biochem Mol Biol (2008) 38:1066-1071


4. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148


5. PubMed ID: 18714353
   The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages
   Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J
   PLoS One (2008) 3:e2997