Stem-loop bmo-mir-71

Accession

MI0005378

Description

Bombyx mori bmo-mir-71 precursor miRNA

Literature search

14 open access papers mention bmo-mir-71
(167 sentences)

Sequence

29199 reads, 348.0 reads per million, 34 experiments

gcaagaugcucucuaccucuUGAAAGACAUGGGUAGUGAGAUGucccguacaucuaaaauUCUCACUACCUUGUCUUUCAUGcggauugggcaaauaucuucacucggcuucggaagau
......(((((....((.(.(((((((((.(((((((((((...................)))))))))))))))))))).).))...)))))...((((((.(........)))))))

Structure

--------------------gcaaga     ucua  u u         U           UGucccgu 
                          ugcuc    cc c UGAAAGACA GGGUAGUGAGA        a
                          |||||    || | ||||||||| |||||||||||        c
                          acggg    gg G ACUUUCUGU UCCAUCACUCU        a
uagaaggcuucggcucacuucuauaa     -uua  c U         -           uaaaaucu 

Annotation confidence High

Genome context

dbj|BSVE01000001.1|: 12853673-12853791 [-]

Mature bmo-miR-71-5p

• Accession: MIMAT0004214
• Description: Bombyx mori bmo-miR-71-5p mature miRNA
• Sequence: 21 - UGAAAGACAUGGGUAGUGAGAUG - 43
• Evidence: experimental ; cloned [3], Illumina [4]

Mature bmo-miR-71-3p

• Accession: MIMAT0015243
• Description: Bombyx mori bmo-miR-71-3p mature miRNA
• Sequence: 61 - UCUCACUACCUUGUCUUUCAUG - 82
• Evidence: experimental ; Illumina [4]

References

1. PubMed ID: 16972323
   Computational prediction of microRNA genes in silkworm genome
   "Tong CZ, Jin YF, Zhang YZ"
   "J Zhejiang Univ Sci B (2006) 7:806-816


2. PubMed ID: 18507836
   Identification and characteristics of microRNAs from Bombyx mori
   He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
   BMC Genomics (2008) 9:248


3. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148


4. PubMed ID: 18714353
   The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages
   Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J
   PLoS One (2008) 3:e2997