Stem-loop ath-MIR826a

Accession

MI0005382

Description

Arabidopsis thaliana ath-MIR826a precursor miRNA

Literature search

3 open access papers mention ath-MIR826a
(21 sentences)

Sequence

13367 reads, 77.0 reads per million, 123 experiments

agagacguggaugcuucucguccacaaguucuuuggugccucuaugauaUAGUCCGGUUUUGGAUACGUGAAaaucauaucauauugcugcugugaaaaguuaauuuucaCGUGUCCAAAACCAGAUUAUCucauauugcugcuguguaucuuaucaucuuuuuccugcuacucuuac
((((..(((((((.....)))))))(((.....((((((...(((((.((((((.((((((((((((((((((((((((.((......)).)))))........))))))))))))))))))).)))))).)))))..)).)))).....)))..................))))...

Structure

---    acguggaugcuucucguccac   uucuu    -  cuc     u      C                   --------     u  ua 
   agag                     aag     uggu gc   uauga aUAGUC GGUUUUGGAUACGUGAAaa        ucaua ca  u
   ||||                     |||     |||| ||   ||||| |||||| |||||||||||||||||||        ||||| ||   
   ucuc                     uuc     gucg cg   auacu UAUUAG CCAAAACCUGUGCacuuuu        agugu gu  u
cau    ---aucguccuuuuucuacua   uaugu    u  -uu     C      A                   aauugaaa     c  cg 

Annotation confidence High

Genome context

chr4: 1340479-1340656 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ath-MIR826a

Mature ath-miR826a-5p

• Accession: MIMAT0004242
• Description: Arabidopsis thaliana ath-miR826a-5p mature miRNA
• Sequence: 50 - UAGUCCGGUUUUGGAUACGUGAA - 72
• Evidence: experimental ; 454 [1]

Mature ath-miR826a-3p

• Accession: MIMAT0053862
• Description: Arabidopsis thaliana ath-miR826a-3p mature miRNA
• Sequence: 111 - CGUGUCCAAAACCAGAUUAUC - 131
• Evidence: experimental ; unknown

References

1. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425