Stem-loop ath-MIR828

Accession

MI0005384

Description

Arabidopsis thaliana ath-MIR828 precursor miRNA MIR828

Gene
family

RF01026; MIR828

Literature search

17 open access papers mention ath-MIR828
(41 sentences)

Sequence

1051 reads, 16.0 reads per million, 102 experiments

gugacaaagucacaaaagugauaaacucuccuuuccacuuucuaauguuUCUUGCUUAAAUGAGUAUUCCAuguaaaaaugauucacucacucguauggguggguuggguuuucucuucaugagaugcucauuugaGCAAGCAAUGUUUGGAAGUGGgacuauuuaauaucauguaugaguuuuaucuuuu
(((((...)))))(((((....((((((....((((((((((.((((((.((((((((((((((((((.((((.......(((((((((((((....))))))).)))))).......)))).)))))))))))))))))).)))))).))))))))))..................))))))...)))))

Structure

gugacaaagucac     ugau      --------------uccu          u      U                  C    uaaaaau      -       g 
             aaaag    aaacuc                  uuccacuuuc aauguu CUUGCUUAAAUGAGUAUU CAug       gauuca cucacuc u
             |||||    ||||||                  |||||||||| |||||| |||||||||||||||||| ||||       |||||| |||||||  
             uuuuc    uuugag                  agGGUGAAGG UUGUAA GAACGaguuuacucguag guac       uugggu ggguggg a
-------------     -uau      uauguacuauaauuuauc          U      C                  a    uucucuu      u       u 

Annotation confidence Low

Genome context

chr4: 13846971-13847161 [+]

Mature ath-miR828-5p

• Accession: MIMAT0004244
• Description: Arabidopsis thaliana ath-miR828-5p mature miRNA
• Sequence: 50 - UCUUGCUUAAAUGAGUAUUCCA - 71
• Evidence: experimental ; 454 [1]

Mature gma-miR1525-5p

• Accession: MIMAT0007386
• Description: Arabidopsis thaliana gma-miR1525-5p mature miRNA
• Sequence: 137 - GCAAGCAAUGUUUGGAAGUGG - 157
• Evidence: experimental ; 454 [1]

Mature ath-miR828-3p

• Accession: MIMAT0061470
• Description: Arabidopsis thaliana ath-miR828-3p mature miRNA
• Sequence: 137 - GCAAGCAAUGUUUGGAAGUGG - 157
• Evidence: experimental ; unknown

References

1. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425