Stem-loop ath-MIR832

Accession

MI0005388

Description

Arabidopsis thaliana ath-MIR832 precursor miRNA

Sequence

aagaaagaaaaaauaagugacaaguaacaaacaugagaaaggugaaacuUGCUGGGAUCGGGAAUCGAAAgauccgaaagccagucuuuagaggauucugaacgggcuagugaaaguaaacuugugaugugaccauauugugcaauaugaauguaaguuggugguguggucaucucacaagguggcuaagucaucucacuuauuuucuuaacgaaagcaucagcccguuuagcaucaucuucuugaagcuugccuuucgcaucuuUUGAUUCCCAAUCCAAGCAAGguucaccuuuuuuuuugccaugaccuuuacaaaauauccaaauuuug
...........................((((...(((((((((((..((((((.((((.((((((((((((((.((((((.(((.(((((((((((.(((((((((((.(((..(((...(((((((.((((((((((((..((((..........)))).)))))))))))).)))))))...)))((((......)))).(((((.....)))))))).)))))))))))....)))))).))))).))).)))))).)))))))))))))).)))).))))))..)))))))))))))))............((((((......))))))

Structure

---aagaaagaaaaaauaagugacaaguaa    cau           aa      G    C              c      c   u     -      ---u           a   ----------------------------aa   aaa       u            ug    auga 
                              caaa   gagaaagguga  cuUGCU GGAU GGGAAUCGAAAgau cgaaag cag cuuua gaggau    cugaacgggcu gug                              agu   cuuguga gugaccauauug  caau    a
                              ||||   |||||||||||  |||||| |||| |||||||||||||| |||||| ||| ||||| ||||||    ||||||||||| |||                              |||   ||||||| ||||||||||||  ||||     
                              guuu   uuuuuuccacu  GAACGA CCUA CCCUUAGUUuucua gcuuuc guu gaagu cuucua    gauuugcccga uac                              ucg   gaacacu uacugguguggu  guug    u
guuuuaaaccuauaaaacauuuccaguacc    ---           ug      A    A              c      c   c     u      cuac           c   gaaagcaauucuuuuauucacucuacugaa   gug       c            -g    aaug 

Annotation confidence Not enough data

Genome context

chr4: 6413010-6413342 [+]

Mature ath-miR832-5p

• Accession: MIMAT0004250
• Description: Arabidopsis thaliana ath-miR832-5p mature miRNA
• Sequence: 50 - UGCUGGGAUCGGGAAUCGAAA - 70
• Evidence: experimental ; 454 [1]

Mature ath-miR832-3p

• Accession: MIMAT0004251
• Description: Arabidopsis thaliana ath-miR832-3p mature miRNA
• Sequence: 266 - UUGAUUCCCAAUCCAAGCAAG - 286
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425