Stem-loop ath-MIR834

Accession

MI0005390

Description

Arabidopsis thaliana ath-MIR834 precursor miRNA MIR834

Gene
family

RF04137; MIR834

Literature search

2 open access papers mention ath-MIR834
(10 sentences)

Sequence

uacaacauauguuaccaguugugcuaucauuuuuuucagcgacagccaaaaucaccaccgcuucugcuacgaacauguuaagccauccuuuuaaccguugcugccaccacuauuacggccaucacaagaaaauucaugcaaguggaaacggugauaguagcagcugguaugacacguUGGUAGCAGUAGCGGUGGUAAugccgauagcgugagcggcaauggaagcauugguggugucagaagcaguca
.........((.(((((.(.(((((.((((........((....)).......(((((((((.(((((((.(((.(((((.((((..............(((((....((((((((.(((((..((.((....)).))...))))...).)))))))).))))))))).))))).))).))))))).)))))))))..(((((..........))))))))).))))).).))))).))..........

Structure

-uacaacaua  u     g u     a    uuuuuucagcgacagccaaaauc         u       g   a     a    uccuuuuaaccguu     cacc        g ---    -ca  a  a 
          ug uacca u gugcu ucau                       accaccgcu cugcuac aac uguua gcca              gcugc    acuauuac g   ccau   ca ga a
          || ||||| | ||||| ||||                       ||||||||| ||||||| ||| ||||| ||||              |||||    |||||||| |   ||||   || ||  
          ac guggu g uacga ggua                       UGGUGGCGA GACGAUG Uug acagu uggu              cgacg    ugauagug c   ggug   gu cu a
acugacgaag  u     g u     a    -acggcgagugcgauagccguAA         U       G   c     a    --------------     ---a        g aaa    aac  a  u 

Annotation confidence Not enough data

Genome context

chr5: 2641426-2641674 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ath-MIR834

Mature ath-miR834

• Accession: MIMAT0004254
• Description: Arabidopsis thaliana ath-miR834 mature miRNA
• Sequence: 178 - UGGUAGCAGUAGCGGUGGUAA - 198
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425