Stem-loop ath-MIR835

Accession

MI0005391

Description

Arabidopsis thaliana ath-MIR835 precursor miRNA

Literature search

2 open access papers mention ath-MIR835
(7 sentences)

Sequence

22118 reads, 134.0 reads per million, 183 experiments

ugcucgauucuucagauagaaauucuggucauCUUUGUGUUUAGGCUUUUUCUugcauauguucuuuaucucuauugauugauauuguucaaugagcaacauacuuuucucuucuaccuggauuuguuugaugguuuuaagaacucuguucuuuuugacguuuuacccaacaauauaacuucuguuguagucaucuucugcugcaacccauccacaaagcuuaucaugcaagauuaaacccuuucucgauggguugcaagagaacaucacuaaaauagaAGUAACAUUGUUGGGGAAAAACGUcacaaauccagguauuagagaauaggaugcugaucguugaaaauaacuaucuauaaagauggagaagauacgcaagaaagaguuguaaacacaaagc
...........(((((.......)))))....(((((((((((.((((((((((((.(((.((((((((((.(((.(((.(.((((.((((((((.((.((..((.((((((..(((((((((((((...........((((((...))))))...((((((((.(((((((((...(((((((((.((((.((.((((..(((((((((((...((((...(((......)))......))))...)))))))))))..)))).)).)))).)))))))))...)))))))))..)))))))))))))))))))))..)))))).))..)).)).)))))))))))).).))).))).)))))))))).))).))))))))))))..))))))))))).

Structure

ugcucgauucuucagauagaaauucuggucau           -G            a   g          c   u   u a    g        g  a  ua  u      uc             uugaugguuuuaagaacucuguucuuuuu        -a         aua         g    c  c    gc           cac    ---cuu   au 
                                CUUUGUGUUUA  GCUUUUUCUugc uau uucuuuaucu uau gau g uauu uucaauga ca ca  cu uucucu  uaccuggauuugu                             gacguuuu  cccaacaau   acuucuguu uagu au uucu  ugcaacccauc   aaag      auc  g
                                |||||||||||  |||||||||||| ||| |||||||||| ||| ||| | |||| |||||||| || ||  || ||||||  |||||||||||||                             ||||||||  |||||||||   ||||||||| |||| || ||||  |||||||||||   ||||      |||   
                                gaaacacaaau  ugagaaagaacg aua aagagguaga aua cua c auaa aaguugcu gu gu  ga aagaga  auggaccuaaaca                             cUGCAAAA  GGGUUGUUA   UGAagauaa auca ua aaga  acguuggguag   uuuc      uag  c
-------------------------------c           gu            c   g          a   u   u a    -        a  c  ag  u      uu             -----------------------------        AG         CAA         a    c  c    ga           cuc    ccaaau   aa 

Annotation confidence Low

Genome context

chr1: 28544454-28544853 [-]

Mature ath-miR835-5p

• Accession: MIMAT0004255
• Description: Arabidopsis thaliana ath-miR835-5p mature miRNA
• Sequence: 33 - CUUUGUGUUUAGGCUUUUUCU - 53
• Evidence: experimental ; 454 [1]

Mature ath-miR835-3p

• Accession: MIMAT0004256
• Description: Arabidopsis thaliana ath-miR835-3p mature miRNA
• Sequence: 280 - AGUAACAUUGUUGGGGAAAAACGU - 303
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425