Stem-loop ath-MIR836

Accession

MI0005392

Description

Arabidopsis thaliana ath-MIR836 precursor miRNA

Literature search

1 open access papers mention ath-MIR836
(1 sentences)

Sequence

gcaaagcugccauuuuauaguccaaaacuuaaauuucguguuugcaagucuccacccaucgaaggaaacacuagaagagauauaauuuauuugaggggagaaauauuugacacggaagcauagcuccauauccuucaauggaggugugguccuucaacaaaaauaccccccucuugaaacucuguuucaccacaccuccauugaaggaccugaagcuaugcuuccuugucauauuccuuaccaucaaauaaaugcucuguuuUCCUGUGUUUCCUUUGAUGCGUGGagacuuuuaaaaacgaaauuuaaguuugggcuaaaauaaacggcaguuuug
.((((((((((.(((..(((((((((.((((((((((((.((((.((((((((((.(((((((((((((((..(((((.(....((((((((((((..((.((((..(((((.((((((((((((.((..((((((((((((((((((((.........................(((((...)))))))))))))))))))))))))..)).)))))))))))).))))))))).))..)).))))))))))....).)))))..))))))))))))))).)))))))))).)))).)))))))))))))))))))))....))).))))))))))

Structure

g          a   --ua         a            g    c          c               ua     g uaua          -  gg  a    uu     c            c  ua                    ccuucaacaaaaauaccccccucuu     u 
 caaagcugcc uuu    uaguccaaa cuuaaauuucgu uuug aagucuccac caucgaaggaaacac  gaaga a    auuuauuuga gg  ag aaua  ugaca ggaagcauagcu ca  uccuucaauggagguguggu                         gaaac  
 |||||||||| |||    ||||||||| |||||||||||| |||| |||||||||| |||||||||||||||  ||||| |    |||||||||| ||  || ||||  ||||| |||||||||||| ||  ||||||||||||||||||||                         ||||| c
 guuuugacgg aaa    aucggguuu gaauuuaaagca aaau uucagaGGUG GUAGUUUCCUUUGUG  CUuuu u    uaaauaaacu cc  uc uuau  acugu ccuucguaucga gu  aggaaguuaccuccacacca                         cuuug  
-          c   uaaa         -            a    u          C               UC     g cucg          a  au  c    --     u            a  cc                    -------------------------     u 

Annotation confidence Not enough data

Genome context

chr2: 10634280-10634616 [-]

Mature ath-miR836

• Accession: MIMAT0004257
• Description: Arabidopsis thaliana ath-miR836 mature miRNA
• Sequence: 263 - UCCUGUGUUUCCUUUGAUGCGUGG - 286
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425