Stem-loop ath-MIR836

Accession

MI0005392

Description

Arabidopsis thaliana ath-MIR836 precursor miRNA

Literature search

1 open access papers mention ath-MIR836
(1 sentences)

Sequence

6918 reads, 22.0 reads per million, 171 experiments

gcaaagcugccauuuuauaguccaaaacuuaaAUUUCGUGUUUGCAAGUCUCCACCcaucgaaggaaacacuagaagagauauaauuuauuugaggggagaaauauuugacacggaagcauagcuccauauccuucaauggaggugugguccuucaacaaaaauaccccccucuugaaacucuguuucaccacaccuccAUUGAAGGACCUGAAGCUAUGCUUCcuugucauauuccuuaccaucaaauaaaugcucuguuuuccuguguuuccuuugaugcguggagacuuuuaaaaacgaaauuuaaguuugggcuaaaauaaacggcaguuuug
.((((((((((.(((..(((((((((.((((((((((((.((((.((((((((((.(((((((((((((((..(((((.(....((((((((((((..((.((((..(((((.((((((((((((.((..((((((((((((((((((((.........................(((((...)))))))))))))))))))))))))..)).)))))))))))).))))))))).))..)).))))))))))....).)))))..))))))))))))))).)))))))))).)))).)))))))))))))))))))))....))).))))))))))

Structure

g          a   --ua         a            G    C          C               ua     g uaua          -  gg  a    uu     c            c  ua                    ccuucaacaaaaauaccccccucuu     u 
 caaagcugcc uuu    uaguccaaa cuuaaAUUUCGU UUUG AAGUCUCCAC caucgaaggaaacac  gaaga a    auuuauuuga gg  ag aaua  ugaca ggaagcauagcu ca  uccuucaauggagguguggu                         gaaac  
 |||||||||| |||    ||||||||| |||||||||||| |||| |||||||||| |||||||||||||||  ||||| |    |||||||||| ||  || ||||  ||||| |||||||||||| ||  ||||||||||||||||||||                         ||||| c
 guuuugacgg aaa    aucggguuu gaauuuaaagca aaau uucagaggug guaguuuccuuugug  cuuuu u    uaaauaaacu cc  uc uuau  acugu cCUUCGUAUCGA GU  AGGAAGUUAccuccacacca                         cuuug  
-          c   uaaa         -            a    u          c               uc     g cucg          a  au  c    --     u            A  CC                    -------------------------     u 

Annotation confidence Low

Genome context

chr2: 10634280-10634616 [-]

Mature ath-miR836-5p

• Accession: MIMAT0053866
• Description: Arabidopsis thaliana ath-miR836-5p mature miRNA
• Sequence: 33 - AUUUCGUGUUUGCAAGUCUCCACC - 56
• Evidence: experimental ; unknown

Mature ath-miR836-3p

• Accession: MIMAT0004257
• Description: Arabidopsis thaliana ath-miR836-3p mature miRNA
• Sequence: 200 - AUUGAAGGACCUGAAGCUAUGCUUC - 224
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425