Stem-loop ath-MIR837

Accession

MI0005393

Description

Arabidopsis thaliana ath-MIR837 precursor miRNA MIR837

Gene
family

RF04099; MIR837

Literature search

2 open access papers mention ath-MIR837
(3 sentences)

Sequence

10038 reads, 90.0 reads per million, 177 experiments

uuuuugauaaauacuuuuguuugcuuacaaguauaaagucaucauguuuuuuucAUCAGUUUCUUGUUCGUUUCAAaauuaugauuuuuguuuacuuacacucauaaucuugAAACGAACAAAAAACUGAUGGAaaaacaugaggacuuuauacuuguaaauaaauaaaaauauuuauuagaaa
.((((((((((((.(((((((((.((((((((((((((((.(((((((((((.(((((((((.(((((((((((((.(((((((....(((......))).))))))).))))))))))))).)))))))))))))))))))).)))))))))))))))).))))))))).)))))))))))).

Structure

u            c         c                a           u         C             a       uuuu   uu 
 uuuugauaaaua uuuuguuug uuacaaguauaaaguc ucauguuuuuu cAUCAGUUU UUGUUCGUUUCAA auuauga    ugu  a
 |||||||||||| ||||||||| |||||||||||||||| ||||||||||| ||||||||| ||||||||||||| |||||||    |||   
 aagauuauuuau aaaauaaau aauguucauauuucag aguacaaaaAG GUAGUCAAA AACAAGCAAAguu uaauacu    aca  c
a            a         a                g           -         A             c       ---c   uu 

Annotation confidence Medium

Genome context

chr1: 6520941-6521124 [+]

Mature ath-miR837-5p

• Accession: MIMAT0004258
• Description: Arabidopsis thaliana ath-miR837-5p mature miRNA
• Sequence: 55 - AUCAGUUUCUUGUUCGUUUCAA - 76
• Evidence: experimental ; 454 [1], Illumina [2]

Mature ath-miR837-3p

• Accession: MIMAT0004259
• Description: Arabidopsis thaliana ath-miR837-3p mature miRNA
• Sequence: 113 - AAACGAACAAAAAACUGAUGGA - 134
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425


2. PubMed ID: 19815687
   Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
   "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
   "J Exp Bot (2010) 61:165-177