Stem-loop ath-MIR839

Accession

MI0005395

Description

Arabidopsis thaliana ath-MIR839 precursor miRNA MIR839

Gene
family

RF04168; MIR839

Literature search

3 open access papers mention ath-MIR839
(18 sentences)

Sequence

164483 reads, 819.0 reads per million, 184 experiments

cucacucaugugagcagaaagaguagcaugauauuuucuucaaggucuuUACCAACCUUUCAUCGUUCCCUucuuugcaauaacgcuguuuugcaaaaccgugauagugcugagccgaugagccucuaaugaaauuauagacucaucggcucaggaccauugcgguugugcaaaacGGUGUUAUUGCUGAGAAGGGAACGcaugagagguugguaaagaccucaauggaaucuuaugguacucuuuuugcucacaugagugagu
(((((((((((((((((((((((((.(((((....((((...(((((((((((((((((((((((((((((((((.(((((((((((((((((((.(((((((((.((.(((((((((((((.((.((((...)))).)).))))))))))))).)).))))))))).))))))))))))))))))).)))))))))))).)))))))))))))))))))))....))))..))))).))))))))))))))))))))))))).

Structure

-                         g     uauu    -uca                     -            u                   a         a  g             c  c    g 
 cucacucaugugagcagaaagagua cauga    uucu    aggucuuUACCAACCUUUCAU CGUUCCCUucuu gcaauaacgcuguuuugca aaccgugau gu cugagccgaugag cu uaau  
 ||||||||||||||||||||||||| |||||    ||||    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||| || ||||||||||||| || |||| a
 gagugaguacacucguuuuucucau guauu    aagg    uccagaaaugguuggagagua GCAAGGGAAGAG CGUUAUUGUGGcaaaacgu uuggcguua ca gacucggcuacuc ga auua  
u                         g     --cu    uaac                     c            U                   g         c  g             a  u    a 

Annotation confidence Low

Genome context

chr1: 25278944-25279207 [-]

Mature ath-miR839-5p

• Accession: MIMAT0004261
• Description: Arabidopsis thaliana ath-miR839-5p mature miRNA
• Sequence: 50 - UACCAACCUUUCAUCGUUCCCU - 71
• Evidence: experimental ; 454 [1]

Mature ath-miR839-3p

• Accession: MIMAT0053868
• Description: Arabidopsis thaliana ath-miR839-3p mature miRNA
• Sequence: 177 - GGUGUUAUUGCUGAGAAGGGAACG - 200
• Evidence: experimental ; unknown

References

1. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425