Accession
MI0005397
Description
Arabidopsis thaliana
ath-MIR841a precursor miRNA MIR841
Gene
family?
family?
RF04139;
MIR841
Literature search
6 open access papers mention ath-MIR841a
(9 sentences)
(9 sentences)
Sequence
gcaccaacacuacuaugugcagaaacucuguucuuaaguugcuugugaaUACGAGCCACUUGAAACUGAAagaaacaaagaaacaauaucaguauaaaauuuuaucaaauuauacuacaaaaaaugaaauuucuuuguuuauuucaAUUUCUAGUGGGUCGUAUUCAcaugcaacucaagacuagaguaucuacaacauggucgacuuggug
.((((((..(.((((((((.(((.((((((.((((.((((((.(((((((((((.(((((.((((.(((((.(((((((((((((.....(((((((............)))))))........))...))))))))))).))))).)))).))))).))))))))))).)))))).)))).)))))).))).).))))))).)..))))))
.((((((..(.((((((((.(((.((((((.((((.((((((.(((((((((((.(((((.((((.(((((.(((((((((((((.....(((((((............)))))))........))...))))))))))).))))).)))).))))).))))))))))).)))))).)))).)))))).))).).))))))).)..))))))
Structure
g ca u - c a u a u G U C g --- ---auauc aauuu caccaa c acuaugu g aga acucug ucuu aguugc ugugaaUACGA CCACU GAAA UGAAa aaacaaagaaa ca aguauaa u |||||| | ||||||| | ||| |||||| |||| |||||| ||||||||||| ||||| |||| ||||| ||||||||||| || ||||||| gugguu g ugguaca c ucu ugagau agaa ucaacg acACUUAUGCU GGUGA CUUU acuuu uuuguuucuuu gu ucauauu a - ca c a a a c c u G U A a aaa aaaaaaca aaacu
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
chr4: 7885251-7885462 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from ath-MIR841a
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ath-miR841a-5p
| Accession | MIMAT0004263 |
| Description | Arabidopsis thaliana ath-miR841a-5p mature miRNA |
| Sequence | 50 - UACGAGCCACUUGAAACUGAA - 70 |
| Evidence |
experimental
454 [1], Illumina [2] |
Mature ath-miR841a-3p
| Accession | MIMAT0032022 |
| Description | Arabidopsis thaliana ath-miR841a-3p mature miRNA |
| Sequence | 147 - AUUUCUAGUGGGUCGUAUUCA - 167 |
| Evidence | not_experimental |
References
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