Accession
MI0005403
Description
Arabidopsis thaliana
ath-MIR848 precursor miRNA MIR848
Gene
family?
family?
RF03308;
MIR848
Literature search
3 open access papers mention ath-MIR848
(4 sentences)
(4 sentences)
Sequence
117891
reads,
460.0
reads per million, 184 experiments
aaaacuuucagauugcacaagagaauaugaaaaaguauuaacacaagccUUAUAGCUUGGCAAUCUCAUGucaaauaaggaaaagaagaggaacccaagguauguuucucaucuaccuucuuugacaUGGGACUGCCUAAGCUAAAGGCUUgccauguuaucacauccuucuuucauuucgucgcaaccacuuua
..........(.(((((((((.(((...(((...((..(((((((((((((.((((((((((.((((((((((((.((((...(((.(((((((.........))))))).))).)))).)))))))))))).)))).))))))))))))))...)))))..))....))).))).))).)).)))).)......
..........(.(((((((((.(((...(((...((..(((((((((((((.((((((((((.((((((((((((.((((...(((.(((((((.........))))))).))).)))).)))))))))))).)))).))))))))))))))...)))))..))....))).))).))).)).)))).)......
Structure
aaaacuuuca a - - a uau -aaa au --- A - A u aaa a cca
g uugc ac aag gaa gaa gu uaaca caagccUU UAGCUU GGCA UCUCAUGucaaa aagg aga gaggaac a
| |||| || ||| ||| ||| || ||||| |||||||| |||||| |||| |||||||||||| |||| ||| ||||||| g
c aacg ug uuu cuu cuu ca auugu gUUCGGAA AUCGAA CCGU AGGGUacaguuu uucc ucu cucuuug g
----auuuca c c c a --u ccua cu acc - U C c --a a uau
Annotation confidence
Medium
Do you think this miRNA is real?
Genome context
chr5: 4479397-4479591 [-]
Database links
Mature ath-miR848-5p
| Accession | MIMAT0053872 |
| Description | Arabidopsis thaliana ath-miR848-5p mature miRNA |
| Sequence | 50 - UUAUAGCUUGGCAAUCUCAUG - 70 |
| Evidence |
experimental
unknown |
Mature ath-miR848-3p
| Accession | MIMAT0004270 |
| Description | Arabidopsis thaliana ath-miR848-3p mature miRNA |
| Sequence | 128 - UGGGACUGCCUAAGCUAAAGGCUU - 151 |
| Evidence |
experimental
454 [1], Illumina [2] |
References
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