Stem-loop ath-MIR848

Accession

MI0005403

Description

Arabidopsis thaliana ath-MIR848 precursor miRNA MIR848

Gene
family

RF03308; MIR848

Literature search

2 open access papers mention ath-MIR848
(3 sentences)

Sequence

aaaacuuucagauugcacaagagaauaugaaaaaguauuaacacaagccuuauagcuuggcaaucucaugucaaauaaggaaaagaagaggaacccaagguauguuucucaucuaccuucuuUGACAUGGGACUGCCUAAGCUAaaggcuugccauguuaucacauccuucuuucauuucgucgcaaccacuuua
..........(.(((((((((.(((...(((...((..(((((((((((((.((((((((((.((((((((((((.((((...(((.(((((((.........))))))).))).)))).)))))))))))).)))).))))))))))))))...)))))..))....))).))).))).)).)))).)......

Structure

aaaacuuuca a    -  -   a   uau   -aaa  au     ---        a      -    a            u    aaa   a       cca 
          g uugc ac aag gaa   gaa    gu  uaaca   caagccuu uagcuu ggca ucucaugucaaa aagg   aga gaggaac   a
          | |||| || ||| |||   |||    ||  |||||   |||||||| |||||| |||| |||||||||||| ||||   ||| |||||||   g
          c aacg ug uuu cuu   cuu    ca  auugu   guucggaa AUCGAA CCGU AGGGUACAGUuu uucc   ucu cucuuug   g
----auuuca c    c  c   a   --u   ccua  cu     acc        -      U    C            c    --a   a       uau 

Annotation confidence Low

Genome context

chr5: 4479397-4479591 [-]

Mature ath-miR848

• Accession: MIMAT0004270
• Description: Arabidopsis thaliana ath-miR848 mature miRNA
• Sequence: 123 - UGACAUGGGACUGCCUAAGCUA - 144
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425


2. PubMed ID: 19815687
   Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
   "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
   "J Exp Bot (2010) 61:165-177