miRBase entry: ath-MIR849

Stem-loop ath-MIR849


Accession
MI0005404
Description
Arabidopsis thaliana ath-MIR849 precursor miRNA


Sequence

1453 reads, 14.0 reads per million, 156 experiments
uaauuugguuaaauguuuucaacauuuuuuauuuAUUUAUGAUUGGACAACUACUAGAccaauguuuaguuaguacauccaauguuauaaguacaaaauaauauguguuggaucuacUAACUAAACAUUGGUGUAGUAguuguccgacucuauuguugggagcgagaagauugaucccugguuuaauug
..............((((((((((................((((((((((((((((.((((((((((((((((((.((((((((((((.........)))))....))))))).)))))))))))))))))).)))))))))))))).))...)))))))))).....((((((........)))))).

Structure
------------uaauuugguuaaau          uuuuuuauuuAUUUAU  -              G                  c       ----     aag 
                          guuuucaaca                GA UUGGACAACUACUA Accaauguuuaguuagua auccaau    guuau   u
                          ||||||||||                || |||||||||||||| |||||||||||||||||| |||||||    |||||   a
                          cgaggguugu                cu agccuguugAUGAU UGGUUACAAAUCAAUcau uagguug    uaaua   c
guuaauuuggucccuaguuagaagag          -------------uau  c              G                  c       ugua     aaa 


Annotation confidence Medium
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Genome context
chr3: 16072449-16072637 [-]

Database links

Mature ath-miR849-5p

Accession MIMAT0053873
Description Arabidopsis thaliana ath-miR849-5p mature miRNA
Sequence 35 - AUUUAUGAUUGGACAACUACUAGA - 58
Evidence experimental
unknown

Mature ath-miR849-3p

Accession MIMAT0004271
Description Arabidopsis thaliana ath-miR849-3p mature miRNA
Sequence 118 - UAACUAAACAUUGGUGUAGUA - 138
Evidence experimental
454 [1]

References

  1. PubMed ID: 17182867
    A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
    "Genes Dev (2006) 20:3407-3425