Stem-loop ath-MIR850

Accession

MI0005405

Description

Arabidopsis thaliana ath-MIR850 precursor miRNA

Literature search

3 open access papers mention ath-MIR850
(6 sentences)

Sequence

155417 reads, 441.0 reads per million, 184 experiments

uuuuagauaguguuauguauuuauuucuuaccuauagaaaccugucagcUAAGAUCCGGACUACAACAAAGcacgucuacucuacuauauucuuuugcgauaaucaauagauucuucuaacaucguaaaggaagacaaaagaguauacauacUUAGUUGUCGUCGUAUCUUUGuugagaaguuucuaaauggcacauagaaaguacauaaaacuauaugaa
.((((.(((((.((((((((...(((((..((..(((((((.(.(((((.(((((.((.((.(((((.(((...((.((((((......((((((((((((......((((....))))..))))))))))))......)))))).))...))).))))).)))).))))).))))).).)))))))...)).....))))))))))))).))))).))))

Structure

u    g     g        uua     ---ua  -ua       c g     U     C  G  U     A   cac  c      acuaua            aaucaa    u 
 uuua auagu uuauguau   uuucu     cc   uagaaac u ucagc AAGAU CG AC ACAAC AAG   gu uacucu      uucuuuugcgau      uaga u
 |||| ||||| ||||||||   |||||     ||   ||||||| | ||||| ||||| || || ||||| |||   || ||||||      ||||||||||||      ||||  
 aagu uauca aauacaug   aaaga     gg   aucuuug a aguuG UUCUA GC UG UGUUG UUc   ca augaga      aaggaaaugcua      aucu c
-    a     a        ---     uacac  uaa       a g     U     U  -  C     A   aua  u      aaacag            ----ca    u 

Annotation confidence High

Genome context

chr4: 7845707-7845927 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ath-MIR850

Mature ath-miR850-5p

• Accession: MIMAT0004272
• Description: Arabidopsis thaliana ath-miR850-5p mature miRNA
• Sequence: 50 - UAAGAUCCGGACUACAACAAAG - 71
• Evidence: experimental ; 454 [1]

Mature ath-miR850-3p

• Accession: MIMAT0053874
• Description: Arabidopsis thaliana ath-miR850-3p mature miRNA
• Sequence: 153 - UUAGUUGUCGUCGUAUCUUUG - 173
• Evidence: experimental ; unknown

References

1. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425