Stem-loop ath-MIR847

Accession

MI0005410

Description

Arabidopsis thaliana ath-MIR847 precursor miRNA MIR847

Gene
family

RF04173; MIR847

Literature search

1 open access papers mention ath-MIR847
(1 sentences)

Sequence

26243 reads, 127.0 reads per million, 175 experiments

cauuuucuuguauucaaaguaucuuaaguuaagaagagaauaagauucuuacaUCUUGAUGAAGAGGAAUGGGAagccgaaaucuaaacugaaacagaggcgucacccaauuaucaauugguaagugauaucuauguuucgaucuguaucucggccuuUCACUCCUCUUCUUCUUGAUGuaagaauuuguuauucgacacauuagauggagugaaaaaucuguuagauau
..((((((((...................))))))))((((((((((((((((((..((.((((((((.(((((.(((((.........(((((((.(((.(((((((((((...))))))...))))).))).))))))).........))))).))))).)))))))).))..))))))))))))..)))))).....(((.((((((........)))))).)))..

Structure

cauuuucuuguauucaaaguaucuuaaguuaagaaga      --            UU  U        A     a     aaucuaaac       g   c     ---      a 
                                     gaauaa  gauucuuacaUC  GA GAAGAGGA UGGGA gccga         ugaaaca agg gucac   ccaauu  
                                     ||||||  ||||||||||||  || |||||||| ||||| |||||         ||||||| ||| |||||   |||||| u
                                     cuuauu  uuaagaauGUAG  CU CUUCUCCU ACUuu cggcu         gcuuugu ucu uagug   gguuaa  
--uauagauugucuaaaaagugagguagauuacacag      gu            UU  U        C     c     cuaugucua       a   a     aau      c 

Annotation confidence High

Genome context

chr1: 2165517-2165746 [+]

Mature ath-miR847-5p

• Accession: MIMAT0053877
• Description: Arabidopsis thaliana ath-miR847-5p mature miRNA
• Sequence: 54 - UCUUGAUGAAGAGGAAUGGGA - 74
• Evidence: experimental ; unknown

Mature ath-miR847-3p

• Accession: MIMAT0004278
• Description: Arabidopsis thaliana ath-miR847-3p mature miRNA
• Sequence: 159 - UCACUCCUCUUCUUCUUGAUG - 179
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425