Dead hairpin entry

Stem-loop ath-MIR855

Accession

MI0005411

Description

Arabidopsis thaliana ath-MIR855 precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

3 open access papers mention ath-MIR855
(12 sentences)

Sequence

8400 reads, 61.0 reads per million, 175 experiments

uuuuggagcaaaagcuaaggaaaaggaagauaaggacgauuuugguucuggaauuagcgaggagugucgaucgACACACUCUUGGUGUCGAUCGACAccaguuucggcccagcaaaaacccuagacgcuuucgaguuuacaagagcucaaguuugcccuagaagauuucauuauuugcauuauuaguccguggacguuuuuagggucuAUAUAUAUUGUUUUUAGACCUAAGuuucuuuuaucaagucuuuuaucaagcuuuugcaaaacca
.......(((((((((..((.((((((.((((((((.(((((.(((.((((((..(((((((.((((((((((((((.(....)))))))))))))))..((((..((...))..)))))))...))))...((((((....))))))......((((((((((..(((((...(((......)))...)))))..)))))))))).............))))))))).))))))).))))))...)))))).)).))))))))).......

Structure

uuuugga         aa  a      --a      -  c     u   u      ----------------------------------------------------------------------------------------uu    ---   --------------------a              A U 
       gcaaaagcu  gg aaagga   gauaag ga gauuu ggu cuggaa                                                                                          agcg   agg                     gugucgaucgACAC C C
       |||||||||  || ||||||   |||||| || ||||| ||| ||||||                                                                                          ||||   |||                     |||||||||||||| |  
       cguuuucga  cu uuuucu   cuauuu cu uuGAA CCA GAUUUU                                                                                          ucgc   ucc                     cACAGCUAGCUGUG G U
accaaaa         -a  a      gaa      u  -     U   -      UGUUAUAUAUAucugggauuuuugcaggugccugauuauuacguuuauuacuuuagaagaucccguuugaacucgagaacauuugagcuu    aga   caaaaacgacccggcuuugac              - U