Stem-loop ath-MIR855

Accession

MI0005411

Description

Arabidopsis thaliana ath-MIR855 precursor miRNA

Literature search

3 open access papers mention ath-MIR855
(12 sentences)

Sequence

8400 reads, 61.0 reads per million, 175 experiments

uuuuggagcaaaagcuaaggaaaaggaagauaaggacgauuuugguucuggaauuagcgaggagugucgaucgACACACUCUUGGUGUCGAUCGACAccaguuucggcccagcaaaaacccuagacgcuuucgaguuuacaagagcucaaguuugcccuagaagauuucauuauuugcauuauuaguccguggacguuuuuagggucuAUAUAUAUUGUUUUUAGACCUAAGuuucuuuuaucaagucuuuuaucaagcuuuugcaaaacca
.......(((((((((..((.((((((.((((((((.(((((.(((.((((((..(((((((.((((((((((((((.(....)))))))))))))))..((((..((...))..)))))))...))))...((((((....))))))......((((((((((..(((((...(((......)))...)))))..)))))))))).............))))))))).))))))).))))))...)))))).)).))))))))).......

Structure

uuuugga         aa  a      --a      -  c     u   u      ----------------------------------------------------------------------------------------uu    ---   --------------------a              A U 
       gcaaaagcu  gg aaagga   gauaag ga gauuu ggu cuggaa                                                                                          agcg   agg                     gugucgaucgACAC C C
       |||||||||  || ||||||   |||||| || ||||| ||| ||||||                                                                                          ||||   |||                     |||||||||||||| |  
       cguuuucga  cu uuuucu   cuauuu cu uuGAA CCA GAUUUU                                                                                          ucgc   ucc                     cACAGCUAGCUGUG G U
accaaaa         -a  a      gaa      u  -     U   -      UGUUAUAUAUAucugggauuuuugcaggugccugauuauuacguuuauuacuuuagaagaucccguuugaacucgagaacauuugagcuu    aga   caaaaacgacccggcuuugac              - U 

Annotation confidence Low

Genome context

chr2: 4674427-4674698 [+]

Mature ath-miR855-5p

• Accession: MIMAT0004279
• Description: Arabidopsis thaliana ath-miR855-5p mature miRNA
• Sequence: 74 - ACACACUCUUGGUGUCGAUCGACA - 97
• Evidence: experimental ; Northern [1]

Mature ath-miR855-3p

• Accession: MIMAT0053878
• Description: Arabidopsis thaliana ath-miR855-3p mature miRNA
• Sequence: 209 - AUAUAUAUUGUUUUUAGACCUAAG - 232
• Evidence: experimental ; unknown

References

1. PubMed ID: 17189346
   A family of microRNAs present in plants and animals
   "Arteaga-Vazquez M, Caballero-Perez J, Vielle-Calzada JP"
   "Plant Cell (2006) 18:3355-3369