Stem-loop ath-MIR855

Accession

MI0005411

Description

Arabidopsis thaliana ath-MIR855 precursor miRNA

Literature search

1 open access papers mention ath-MIR855
(2 sentences)

Sequence

uuuuggAGCAAAAGCUAAGGAAAAGGAAgauaaggacgauuuugguucuggaauuagcgaggagugucgaucgacacacucuuggugucgaucgacaccaguuucggcccagcaaaaacccuagacgcuuucgaguuuacaagagcucaaguuugcccuagaagauuucauuauuugcauuauuaguccguggacguuuuuagggucuauauauauuguuuuuagaccuaaguuucuuuuaucaagucuuuuaucaagcuuuugcaaaacca
.......(((((((((..((.((((((.((((((((.(((((.(((.((((((..(((((((.((((((((((((((.(....)))))))))))))))..((((..((...))..)))))))...))))...((((((....))))))......((((((((((..(((((...(((......)))...)))))..)))))))))).............))))))))).))))))).))))))...)))))).)).))))))))).......

Structure

uuuuggA         AA  A      --A      -  c     u   u      uuagcgaggagugucgaucgacacacucuuggugucgaucgacaccaguuucggcccagcaaaaacccuagacgcuuucgaguuuacaagagcucaaguuu          au     uau   ca 
       GCAAAAGCU  GG AAAGGA   gauaag ga gauuu ggu cuggaa                                                                                                     gcccuagaag  uucau   uug  u
       |||||||||  || ||||||   |||||| || ||||| ||| ||||||                                                                                                     ||||||||||  |||||   |||   
       cguuuucga  cu uuuucu   cuauuu cu uugaa cca gauuuu                                                                                                     ugggauuuuu  aggug   gau  u
accaaaa         -a  a      gaa      u  -     u   -      ----------------------------------------------------------------------------------------uguuauauauauc          gc     ccu   ua 

Annotation confidence Not enough data

Genome context

chr2: 4674427-4674698 [+]

Mature ath-miR855

• Accession: MIMAT0004279
• Description: Arabidopsis thaliana ath-miR855 mature miRNA
• Sequence: 7 - AGCAAAAGCUAAGGAAAAGGAA - 28
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 17189346
   A family of microRNAs present in plants and animals
   "Arteaga-Vazquez M, Caballero-Perez J, Vielle-Calzada JP"
   "Plant Cell (2006) 18:3355-3369