Accession
MI0005412
Description
Arabidopsis thaliana
ath-MIR854a precursor miRNA
Literature search
5 open access papers mention ath-MIR854a
(22 sentences)
(22 sentences)
Sequence
16352
reads,
140.0
reads per million, 175 experiments
cgGAUGAGGAUAGGGAGGAGGAGuaugauacgagcauguaucauuucagugagcacguaccuccagcgcgggagagcaagagcuugagugaagcucauagaaacaacaguaaguugcagagguggugcaagaaacaagauaggcuacuuaucaagugcuucaaagccaucacgUUUCUGACGGACAAGAUAAGcugcuucucuucuacuacagcuauuccg
((((..((..(((((((((((((((((((((......)))))).........((((.((((((....((......))..((((((.....)))))).......((((.....))))..)))))))))).((((((..(((.((((((((...)))).......)))))))..))))))................)))))))))))).)))...))..))))
((((..((..(((((((((((((((((((((......)))))).........((((.((((((....((......))..((((((.....)))))).......((((.....))))..)))))))))).((((((..(((.((((((((...)))).......)))))))..))))))................)))))))))))).)))...))..))))
Structure
UG -GA - ugauacgagcauguaucauuucagugagcacguaccuccagcgcgggagagcaagagcuugagugaagcucauagaaacaacaguaaguugcagagguggugca aa a ------- a
cgGA AG UAG GGAGGAGGAGua agaaac gau ggcu acuu
|||| || ||| |||||||||||| |||||| ||| |||| |||| u
gccu uc auc ucuucucuucgu UCUUUg cua ccga ugaa
ua gac a ----------------------------------------------------------------------------------------cGAAUAGAACAGGCAG ca - aacuucg c
Annotation confidence
Low
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Genome context
chr5: 11847719-11847939 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ath-MIR854a
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ath-miR854a-5p
| Accession | MIMAT0004280 |
| Description | Arabidopsis thaliana ath-miR854a-5p mature miRNA |
| Sequence | 3 - GAUGAGGAUAGGGAGGAGGAG - 23 |
| Evidence |
experimental
Northern [1] |
Mature ath-miR854a-3p
| Accession | MIMAT0053879 |
| Description | Arabidopsis thaliana ath-miR854a-3p mature miRNA |
| Sequence | 174 - UUUCUGACGGACAAGAUAAG - 193 |
| Evidence |
experimental
unknown |
References
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