Stem-loop ath-MIR854a

Accession

MI0005412

Description

Arabidopsis thaliana ath-MIR854a precursor miRNA

Literature search

5 open access papers mention ath-MIR854a
(22 sentences)

Sequence

cgGAUGAGGAUAGGGAGGAGGAGuaugauacgagcauguaucauuucagugagcacguaccuccagcgcgggagagcaagagcuugagugaagcucauagaaacaacaguaaguugcagagguggugcaagaaacaagauaggcuacuuaucaagugcuucaaagccaucacguuucugacggacaagauaagcugcuucucuucuacuacagcuauuccg
((((..((..(((((((((((((((((((((......)))))).........((((.((((((....((......))..((((((.....)))))).......((((.....))))..)))))))))).((((((..(((.((((((((...)))).......)))))))..))))))................)))))))))))).)))...))..))))

Structure

    UG  -GA   -            ugauacgagcauguaucauuucagugagcacguaccuccagcgcgggagagcaagagcuugagugaagcucauagaaacaacaguaaguugcagagguggugca      aa   a    -------    a 
cgGA  AG   UAG GGAGGAGGAGua                                                                                                        agaaac  gau ggcu       acuu  
||||  ||   ||| ||||||||||||                                                                                                        ||||||  ||| ||||       |||| u
gccu  uc   auc ucuucucuucgu                                                                                                        ucuuug  cua ccga       ugaa  
    ua  gac   a            ----------------------------------------------------------------------------------------cgaauagaacaggcag      ca   -    aacuucg    c 

Annotation confidence Not enough data

Genome context

chr5: 11847719-11847939 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ath-MIR854a

Mature ath-miR854a

• Accession: MIMAT0004280
• Description: Arabidopsis thaliana ath-miR854a mature miRNA
• Sequence: 3 - GAUGAGGAUAGGGAGGAGGAG - 23
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 17189346
   A family of microRNAs present in plants and animals
   "Arteaga-Vazquez M, Caballero-Perez J, Vielle-Calzada JP"
   "Plant Cell (2006) 18:3355-3369