Accession
MI0005414
Description
Arabidopsis thaliana
ath-MIR854c precursor miRNA
Literature search
5 open access papers mention ath-MIR854c
(19 sentences)
(19 sentences)
Sequence
cgGAUGAGGAUAGGGAGGAGGAGuaugauacgagcauguaucauuucagugagcacguaccuccagcgcgggagagcaagagcuugagugaagcucacagaaccaacaguaaguugcagagguggugcaagaaacaagauaggcuacuuaucaagugcuucaaagccaucacguuucugacagacaagauaagcugcuucucuucuacuacagcuauuccg
((((..((..(((((((((((((((((((((......)))))).........((((.((((((((((((......))..((((((.....))))))................))))..)))))))))).((((((..(((.((((((((...)))).......)))))))..))))))................)))))))))))).)))...))..))))
((((..((..(((((((((((((((((((((......)))))).........((((.((((((((((((......))..((((((.....))))))................))))..)))))))))).((((((..(((.((((((((...)))).......)))))))..))))))................)))))))))))).)))...))..))))
Structure
UG -GA - ---------------------------------------ugauacgagcauguaucauuucaguga g -- gcgggagagcaagagcuugag
cgGA AG UAG GGAGGAGGAGua gcac uaccuc cagc u
|||| || ||| |||||||||||| |||| |||||| |||| g
gccu uc auc ucuucucuucgu cgug guggag guug a
ua gac a cgaauagaacagacagucuuugcacuaccgaaacuucgugaacuauucaucggauagaacaaagaa - ac aaugacaaccaagacacucga
Annotation confidence
Not enough data
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Genome context
chr5: 11838096-11838316 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ath-MIR854c
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ath-miR854c
| Accession | MIMAT0004282 |
| Description | Arabidopsis thaliana ath-miR854c mature miRNA |
| Sequence | 3 - GAUGAGGAUAGGGAGGAGGAG - 23 |
| Evidence |
experimental
Northern [1] |
References
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