Accession
MI0005414
Description
Arabidopsis thaliana
ath-MIR854c precursor miRNA
Literature search
5 open access papers mention ath-MIR854c
(19 sentences)
(19 sentences)
Sequence
12969
reads,
118.0
reads per million, 173 experiments
cgGAUGAGGAUAGGGAGGAGGAGuaugauacgagcauguaucauuucagugagcacguaccuccagcgcgggagagcaagagcuugagugaagcucacagaaccaacaguaaguugcagagguggugcaagaaacaagauaggcuacuuaucaagugcuucaaagccAUCACGUUUCUGACAGACAAGauaagcugcuucucuucuacuacagcuauuccg
((((..((..(((((((((((((((((((((......)))))).........((((.((((((((((((......))..((((((.....))))))................))))..)))))))))).((((((..(((.((((((((...)))).......)))))))..))))))................)))))))))))).)))...))..))))
((((..((..(((((((((((((((((((((......)))))).........((((.((((((((((((......))..((((((.....))))))................))))..)))))))))).((((((..(((.((((((((...)))).......)))))))..))))))................)))))))))))).)))...))..))))
Structure
UG -GA - ugauacgagcauguaucauuucagugagcacguaccuccagcgcgggagagcaagagcuugagugaagcucacagaaccaacaguaaguugcagagguggugca aa a ------- a
cgGA AG UAG GGAGGAGGAGua agaaac gau ggcu acuu
|||| || ||| |||||||||||| |||||| ||| |||| |||| u
gccu uc auc ucuucucuucgu UCUUUG CUA ccga ugaa
ua gac a ----------------------------------------------------------------------------------------cgaauaGAACAGACAG CA - aacuucg c
Annotation confidence
Low
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Genome context
chr5: 11838096-11838316 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ath-MIR854c
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ath-miR854c-5p
| Accession | MIMAT0004282 |
| Description | Arabidopsis thaliana ath-miR854c-5p mature miRNA |
| Sequence | 3 - GAUGAGGAUAGGGAGGAGGAG - 23 |
| Evidence |
experimental
Northern [1] |
Mature ath-miR854c-3p
| Accession | MIMAT0053881 |
| Description | Arabidopsis thaliana ath-miR854c-3p mature miRNA |
| Sequence | 168 - AUCACGUUUCUGACAGACAAG - 188 |
| Evidence |
experimental
unknown |
References
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