Stem-loop mmu-mir-879

Accession

MI0005472

Symbol

MGI: Mir879

Description

Mus musculus mmu-mir-879 precursor miRNA

Gene family

MIPF0000421; mir-879

Literature search

5 open access papers mention mmu-mir-879
(24 sentences)

Sequence

5314 reads, 80 reads per million, 52 experiments

uucuagguccAGAGGCUUAUAGCUCUAAGCCuuggaugaaagagGCUUAUGGCUUCAAGCUUUCGGagcuggagac
((((((.(((.(((((((..((((.((((((((........)))))))).))))..))))))).))).))))))..

Structure

--      g   A       AU    C        gga 
  uucuag ucc GAGGCUU  AGCU UAAGCCuu   u
  |||||| ||| |||||||  |||| ||||||||    
  gagguc aGG UUUCGAA  UCGG AUUCGgag   g
ca      g   C       CU    U        aaa 

Annotation confidence High

Genome context

chr5: 9375704-9375779 [+]

Mature mmu-miR-879-5p

• Accession: MIMAT0004842
• Description: Mus musculus mmu-miR-879-5p mature miRNA
• Sequence: 11 - AGAGGCUUAUAGCUCUAAGCC - 31
• Evidence: experimental ; cloned [1], Illumina [2-3]

Mature mmu-miR-879-3p

• Accession: MIMAT0004843
• Description: Mus musculus mmu-miR-879-3p mature miRNA
• Sequence: 45 - GCUUAUGGCUUCAAGCUUUCGG - 66
• Evidence: experimental ; cloned [1], Illumina [2-3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


3. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009