Stem-loop mmu-mir-297a-4

Accession

MI0005489

Symbol

MGI: Mir297a-4

Description

Mus musculus mmu-mir-297a-4 precursor miRNA mir-297

Gene
family

RF04217; mir-297

Literature search

12 open access papers mention mmu-mir-297a-4
(15 sentences)

Sequence

9024 reads, 195 reads per million, 98 experiments

cuguguguauAUGUAUGUGUGCAUGUGCAUGUguguauaugaguauacaUAUACAUACACACAUACCCAUAcaagcaugcacacaaauacacgcaaaa
.(((((((((.(((.((((((((((((..((((((((((((......)))))))))))))))))..........))))))).))).)))))))))...

Structure

--c         A   A       ----------     CA            ag 
   uguguguau UGU UGUGUGC          AUGUG  UGUguguauaug  u
   ||||||||| ||| |||||||          |||||  ||||||||||||   
   acgcacaua aca acguacg          UACAC  ACAUACAUAUac  a
aaa         a   c       aacAUACCCA     --            au 

Annotation confidence High

Genome context

chr2: 10517067-10517164 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from mmu-mir-297a-4

Mature mmu-miR-297a-5p

• Accession: MIMAT0000375
• Description: Mus musculus mmu-miR-297a-5p mature miRNA
• Sequence: 11 - AUGUAUGUGUGCAUGUGCAUGU - 32
• Evidence: experimental ; cloned [1], Illumina [2-3]

Mature mmu-miR-297a-3p

• Accession: MIMAT0004864
• Description: Mus musculus mmu-miR-297a-3p mature miRNA
• Sequence: 50 - UAUACAUACACACAUACCCAUA - 71
• Evidence: experimental ; cloned [1], Illumina [2-3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


3. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009