Stem-loop mmu-mir-297c

Accession

MI0005492

Symbol

MGI: Mir297c

Description

Mus musculus mmu-mir-297c precursor miRNA mir-297

Gene
family

RF04217; mir-297

Literature search

9 open access papers mention mmu-mir-297c
(10 sentences)

Sequence

6951 reads, 160 reads per million, 97 experiments

cuguguguauAUGUAUGUGUGCAUGUACAUGUguguauaugaauauacaUAUACAUACACACAUACCCAUAcaaacaugcauacaaacacacaaaaau
.(((((((...((((((((((..((((..((((((((((((......))))))))))))..........))))..)))))))))).))))))).....

Structure

----c       auA          CA    --------CA            aa 
     ugugugu   UGUAUGUGUG  UGUA          UGUguguauaug  u
     |||||||   ||||||||||  ||||          ||||||||||||   
     acacaca   acauacguac  acAU          ACAUACAUAUac  a
uaaaa       --a          aa    ACCCAUACAC            au 

Annotation confidence High

Genome context

chr2: 10509016-10509113 [+]

Clustered miRNAs

23 other miRNAs are < 10 kb from mmu-mir-297c

Mature mmu-miR-297c-5p

• Accession: MIMAT0004865
• Description: Mus musculus mmu-miR-297c-5p mature miRNA
• Sequence: 11 - AUGUAUGUGUGCAUGUACAUGU - 32
• Evidence: experimental ; cloned [1], Illumina [2-3]

Mature mmu-miR-297c-3p

• Accession: MIMAT0004866
• Description: Mus musculus mmu-miR-297c-3p mature miRNA
• Sequence: 50 - UAUACAUACACACAUACCCAUA - 71
• Evidence: experimental ; cloned [1], Illumina [2-3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


3. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009