miRBase entry: mmu-mir-466f-3

Stem-loop mmu-mir-466f-3


Accession
MI0005509
Symbol
MGI: Mir466f-3
Description
Mus musculus mmu-mir-466f-3 precursor miRNA

Literature search
28 open access papers mention mmu-mir-466f-3
(69 sentences)

Sequence

5763 reads, 186 reads per million, 99 experiments
cauguguguuUACGUGUGUGUGCAUGUGCAUGuguguauaugaauauauguauaCAUACACACACACAUACACACgcacgcaacacacacacac
..((((((((..((((((((((.(((((..(((((((((((........)))))))))))....))))).)))))))))).)))))))).....

Structure
---ca        UA          C     --CA           gaa 
     uguguguu  CGUGUGUGUG AUGUG    UGuguguauau   u
     ||||||||  |||||||||| |||||    |||||||||||    
     acacacaa  gcacgCACAC UACAC    ACAUACauaug   a
cacac        -c          A     ACAC           uau 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
Landgraf et al. identify several offset sequences which map to the 3' arm of the miR-466f hairpin precursors [1]. One sequence consistent with all three putative hairpin loci is shown here.

Genome context
chr2: 10471953-10472046 [+]
Clustered miRNAs
26 other miRNAs are < 10 kb from mmu-mir-466f-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-466f-5p

Accession MIMAT0004881
Description Mus musculus mmu-miR-466f-5p mature miRNA
Sequence 11 - UACGUGUGUGUGCAUGUGCAUG - 32
Evidence experimental
cloned [1], Illumina [2]
Database links
Predicted targets

Mature mmu-miR-466f-3p

Accession MIMAT0004882
Description Mus musculus mmu-miR-466f-3p mature miRNA
Sequence 55 - CAUACACACACACAUACACAC - 75
Evidence experimental
cloned [1], Illumina [2]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009