Stem-loop mtr-MIR164a

Accession

MI0005573

Description

Medicago truncatula mtr-MIR164a precursor miRNA

Literature search

6 open access papers mention mtr-MIR164a
(61 sentences)

Sequence

451975 reads, 3759.0 reads per million, 111 experiments

cuuguUGGAGAAGCAGGGCACGUGCAaauccucuuucugauucauucucucauaaugcauaucaauaucuuuugCACGUGCUCCCCUUCUCCAACuagg
((.((((((((((..(((((((((((((.........((((.((((.......))))...))))......)))))))))))))..)))))))))).)).

Structure

-  u          CA             uccucuuuc    --u    cu 
 cu guUGGAGAAG  GGGCACGUGCAaa         ugau   cauu  c
 || ||||||||||  |||||||||||||         ||||   ||||  u
 ga CAACCUCUUC  CUCGUGCACguuu         acua   guaa  c
g  u          CC             ---ucuaua    uac    ua 

Annotation confidence High

Genome context

chr1: 23983784-23983882 [+]

Mature mtr-miR164a-5p

• Accession: MIMAT0011059
• Description: Medicago truncatula mtr-miR164a-5p mature miRNA
• Sequence: 6 - UGGAGAAGCAGGGCACGUGCA - 26
• Evidence: experimental ; 454 [2], Northern [2]

Mature mtr-miR164a-3p

• Accession: MIMAT0054760
• Description: Medicago truncatula mtr-miR164a-3p mature miRNA
• Sequence: 75 - CACGUGCUCCCCUUCUCCAAC - 95
• Evidence: experimental ; unknown

References

1. PubMed ID: 19555436
   Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
   "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
   "New Phytol (2009) 184:85-98


2. 
   "Bonnet E"
   (2007) None: