Stem-loop mtr-MIR166c

Accession

MI0005581

Description

Medicago truncatula mtr-MIR166c precursor miRNA

Literature search

9 open access papers mention mtr-MIR166c
(42 sentences)

Sequence

15323273 reads, 94543.0 reads per million, 111 experiments

gcugagagGAACGCAGUCUGGCUCGAGGAaugcucagaucuguuuugaucugaucgauauguucauaucuaauuaauUCUCGGACCAGGCUUCAUUCCUcccauc
..((.((((((.(.(((((((.(((((((....(((((((......)))))))..(((((....))))).......))))))).))))))).).)))))).))..

Structure

gc  a      C C       C       -------------------augc       ug 
  ug gagGAA G AGUCUGG UCGAGGA                       ucagauc  u
  || |||||| | ||||||| |||||||                       |||||||   
  ac cUCCUU C UCGGACC GGCUCUu                       agucuag  u
cu  c      A U       A       aauuaaucuauacuuguauagcu       uu 

Annotation confidence High

Genome context

chr3: 33641974-33642078 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR166c

Mature mtr-miR166c-5p

• Accession: MIMAT0054766
• Description: Medicago truncatula mtr-miR166c-5p mature miRNA
• Sequence: 9 - GAACGCAGUCUGGCUCGAGGA - 29
• Evidence: experimental ; unknown

Mature mtr-miR166c-3p

• Accession: MIMAT0011067
• Description: Medicago truncatula mtr-miR166c-3p mature miRNA
• Sequence: 78 - UCUCGGACCAGGCUUCAUUCCU - 99
• Evidence: experimental ; Illumina [2]

References

1. 
   "Bonnet E"
   (2007) None:


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553