miRBase entry: mtr-MIR166e

Stem-loop mtr-MIR166e


Accession
MI0005594
Description
Medicago truncatula mtr-MIR166e precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
9 open access papers mention mtr-MIR166e
(40 sentences)

Sequence

uuugaggGGAAUGUUGGCUGGCUCGAGGcuuuucaguuucacaaaggaaguucagucuuaauuguaugaacuauaaggcuUCGGACCAGGCUUCAUUCCCCucaaa
.((((((((((((..(.((((.((((((((((..(((((.((((...(((......)))..))))..)))))..)))))))))).)))).)..)))))))))))).

Structure
u            UU G    C          uc     -c    agg   uu 
 uugaggGGAAUG  G CUGG UCGAGGcuuu  aguuu  acaa   aag  c
 ||||||||||||  | |||| ||||||||||  |||||  ||||   |||   
 aacuCCCCUUAC  C GACC GGCUucggaa  ucaag  uguu   uuc  a
a            UU G    A          ua     ua    -aa   ug 


Annotation confidence Not enough data
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Genome context
chr8: 27465367-27465472 [-]

Database links

Mature mtr-miR166e-3p

Accession MIMAT0011080
Description Medicago truncatula mtr-miR166e-3p mature miRNA
Sequence 81 - UCGGACCAGGCUUCAUUCCCC - 101
Evidence experimental
Illumina [2]

Mature mtr-miR166e-5p

Accession MIMAT0026726
Description Medicago truncatula mtr-miR166e-5p mature miRNA
Sequence 8 - GGAAUGUUGGCUGGCUCGAGG - 28
Evidence experimental
Illumina [2]

References


  1. "Bonnet E"
    (2007) None:

  2. PubMed ID: 23572382
    microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
    "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
    "Planta (2013) 238:91-105