Stem-loop mtr-MIR398a

Accession

MI0005599

Description

Medicago truncatula mtr-MIR398a precursor miRNA

Literature search

5 open access papers mention mtr-MIR398a
(11 sentences)

Sequence

393146 reads, 2891.0 reads per million, 111 experiments

ucucagaGGAGUGACACUGAGAACACAAGauugauuaaucauauaauguauuugguuguuacuaguugauuUUGUGUUCUCAGGUCACCCCUuugagu
.((((((((.(((((.(((((((((((((((((((((.....(((((.......)))))...)))))))))))))))))))))))))).)))))))).

Structure

u        A     A                     aucau     gu 
 cucagaGG GUGAC CUGAGAACACAAGauugauua     auaau  a
 |||||||| ||||| |||||||||||||||||||||     |||||  u
 gaguuUCC CACUG GACUCUUGUGUUuuaguugau     uguug  u
u        C     -                     --cau     gu 

Annotation confidence High

Genome context

chr5: 18765673-18765770 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR398a

Mature mtr-miR398a-5p

• Accession: MIMAT0022935
• Description: Medicago truncatula mtr-miR398a-5p mature miRNA
• Sequence: 8 - GGAGUGACACUGAGAACACAAG - 29
• Evidence: experimental ; Illumina [3]

Mature mtr-miR398a-3p

• Accession: MIMAT0011085
• Description: Medicago truncatula mtr-miR398a-3p mature miRNA
• Sequence: 72 - UUGUGUUCUCAGGUCACCCCU - 92
• Evidence: experimental ; Northern [2]

References

1. PubMed ID: 19555436
   Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
   "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
   "New Phytol (2009) 184:85-98


2. 
   "Bonnet E"
   (2007) None:


3. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553