Stem-loop mtr-MIR172a

Accession

MI0005600

Description

Medicago truncatula mtr-MIR172a precursor miRNA

Literature search

9 open access papers mention mtr-MIR172a
(34 sentences)

Sequence

31245 reads, 291.0 reads per million, 111 experiments

gccgguGGAGCAUCAUCAGGAUUCACAagauuuugaaggguuuaauuuguuuugauuguuucaaauagauuagcccuuugacauaugAGAAUCCUGAUGAUGCUGCAGcugca
((.(.((.((((((((((((((((.((..((.((((((((((.(((((((((.((.....))))))))))))))))))))).)).)).)))))))))))))))).)).).)).

Structure

-  c g  G                A  ag  u          u         u  u 
 gc g uG AGCAUCAUCAGGAUUC CA  au uugaaggguu aauuuguuu ga u
 || | || |||||||||||||||| ||  || |||||||||| ||||||||| || g
 cg c AC UCGUAGUAGUCCUAAG gu  ua aguuucccga uuagauaaa cu u
a  u G  G                A  -a  c          -         -  u 

Annotation confidence High

Genome context

chr5: 33265814-33265926 [-]

Mature mtr-miR172a-5p

• Accession: MIMAT0054773
• Description: Medicago truncatula mtr-miR172a-5p mature miRNA
• Sequence: 7 - GGAGCAUCAUCAGGAUUCACA - 27
• Evidence: experimental ; unknown

Mature mtr-miR172a-3p

• Accession: MIMAT0011086
• Description: Medicago truncatula mtr-miR172a-3p mature miRNA
• Sequence: 88 - AGAAUCCUGAUGAUGCUGCAG - 108
• Evidence: experimental ; 454 [2], Northern [2]

References

1. PubMed ID: 19555436
   Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
   "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
   "New Phytol (2009) 184:85-98


2. 
   "Bonnet E"
   (2007) None: