Stem-loop mtr-MIR399n

Accession

MI0005609

Description

Medicago truncatula mtr-MIR399n precursor miRNA

Literature search

8 open access papers mention mtr-MIR399n
(22 sentences)

Sequence

2102 reads, 19.0 reads per million, 107 experiments

agucauaGGGCAUGUCUCUAUUGGCAGGugauauggugauauuucauuugacuuuaaggcucuagaaauucacuUGCCAAAGGAGAGCUGCCCUAcgagu
..((.(((((((..(((((.(((((((((((...(((((....))))).....................))))))))))).)))))..))))))).))..

Structure

ag  a       UG     A           ------------------uau     u 
  uc uaGGGCA  UCUCU UUGGCAGGuga                     gguga a
  || |||||||  ||||| |||||||||||                     |||||  
  ag AUCCCGU  AGAGG AACCGUucacu                     uuacu u
ug  c       CG     A           uaaagaucucggaauuucagu     u 

Annotation confidence High

Genome context

chr6: 21480330-21480429 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR399n

Mature mtr-miR399n-5p

• Accession: MIMAT0054779
• Description: Medicago truncatula mtr-miR399n-5p mature miRNA
• Sequence: 8 - GGGCAUGUCUCUAUUGGCAGG - 28
• Evidence: experimental ; unknown

Mature mtr-miR399n-3p

• Accession: MIMAT0011095
• Description: Medicago truncatula mtr-miR399n-3p mature miRNA
• Sequence: 75 - UGCCAAAGGAGAGCUGCCCUA - 95
• Evidence: not_experimental

References

1. 
   "Bonnet E"
   (2007) None: