miRBase entry: mtr-MIR166f

Stem-loop mtr-MIR166f


Accession
MI0005614
Description
Medicago truncatula mtr-MIR166f precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
9 open access papers mention mtr-MIR166f
(40 sentences)

Sequence

uguuuggaaugagguuuguuccaagaucaucacacaucauguuucuucuucccuuucaauaauucuugauuaauuuauguucauacaucuauauauauaucuauauauauuaucaagucauuacaugcaugggaugagauauugagagugaucUCGGACCAGGCUUCAUUCCUCacacc
(((..(((((((((((((.(((.(((((((......(((....((((..((((...((.((((.((((((......((((....)))).((((((((....))))))))..))))))..))))..))...)))).))))...)))..))))))).))).)))))))))))))..)))..

Structure
--   uu             u   a       cacaca   uguu    cu    uuu  -a    -u      uaauuuauguucauacauc        u 
  ugu  ggaaugagguuug ucc agaucau      uca    ucuu  uccc   ca  uaau  cuugau                   uauauaua a
  |||  ||||||||||||| ||| |||||||      |||    ||||  ||||   ||  ||||  ||||||                   ||||||||  
  aca  CCUUACUUCGGAC AGG Ucuagug      agu    agag  aggg   gu  auua  gaacua                   auauauau u
cc   CU             C   C       ----ag   -uau    -u    uac  ac    cu      -----------------uu        c 


Annotation confidence Not enough data
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Genome context
chr7: 26018024-26018202 [-]

Database links

Mature mtr-miR166f

Accession MIMAT0011100
Description Medicago truncatula mtr-miR166f mature miRNA
Sequence 154 - UCGGACCAGGCUUCAUUCCUC - 174
Evidence experimental
Illumina [2-3]

References


  1. "Bonnet E"
    (2007) None:

  2. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553

  3. PubMed ID: 23572382
    microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
    "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
    "Planta (2013) 238:91-105