Stem-loop mtr-MIR171d

Accession

MI0005619

Description

Medicago truncatula mtr-MIR171d precursor miRNA

Literature search

8 open access papers mention mtr-MIR171d
(53 sentences)

Sequence

22550 reads, 117.0 reads per million, 111 experiments

aaugAGAUAUUGGCCUGGUUCACUCagaccaagugauaaaccacuaagauacaguauuguacuugugugguuuuggguuugaUUGAGCCGUGCCAAUAUCUCAcu
..((((((((((((.(((((((.(((((((.......(((((((((((.((((....)))))))).)))))))..))))))).))))))).))))))))))))..

Structure

aa            C       C       aagugau       -    a    g 
  ugAGAUAUUGGC UGGUUCA UCagacc       aaaccac uaag uaca u
  |||||||||||| ||||||| |||||||       ||||||| |||| ||||  
  ACUCUAUAACCG GCCGAGU aguuugg       uuuggug guuc augu a
uc            U       U       -----gu       u    -    u 

Annotation confidence High

Genome context

chr8: 20063684-20063788 [-]

Mature mtr-miR171d-5p

• Accession: MIMAT0054787
• Description: Medicago truncatula mtr-miR171d-5p mature miRNA
• Sequence: 5 - AGAUAUUGGCCUGGUUCACUC - 25
• Evidence: experimental ; unknown

Mature mtr-miR171d-3p

• Accession: MIMAT0011105
• Description: Medicago truncatula mtr-miR171d-3p mature miRNA
• Sequence: 83 - UUGAGCCGUGCCAAUAUCUCA - 103
• Evidence: experimental ; 454 [2], Northern [2]

References

1. PubMed ID: 19555436
   Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
   "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
   "New Phytol (2009) 184:85-98


2. 
   "Bonnet E"
   (2007) None: