Stem-loop mtr-MIR171e

Accession

MI0005620

Description

Medicago truncatula mtr-MIR171e precursor miRNA

Literature search

8 open access papers mention mtr-MIR171e
(54 sentences)

Sequence

209741 reads, 2097.0 reads per million, 111 experiments

aaagCGAUGUUGGUGAGGUUCAAUCcgaagacggauuuacauguauagaguuguaaaauacgaucucagaUUGAGCCGCGCCAAUAUCACUuu
((((.((((((((((.(((((((((.((.((((..((((((..........))))))...)).)))).))))))))).)))))))))).))))

Structure

    C          A         c  a  -  -ga      ugua 
aaag GAUGUUGGUG GGUUCAAUC ga ga cg   uuuaca    u
|||| |||||||||| ||||||||| || || ||   ||||||     
uuUC CUAUAACCGC CCGAGUUag cu cu gc   aaaugu    a
    A          G         a  -  a  aua      ugag 

Annotation confidence High

Genome context

chr4: 39704652-39704744 [+]

Mature mtr-miR171e-5p

• Accession: MIMAT0026731
• Description: Medicago truncatula mtr-miR171e-5p mature miRNA
• Sequence: 5 - CGAUGUUGGUGAGGUUCAAUC - 25
• Evidence: experimental ; Illumina [3]

Mature mtr-miR171e-3p

• Accession: MIMAT0011106
• Description: Medicago truncatula mtr-miR171e-3p mature miRNA
• Sequence: 71 - UUGAGCCGCGCCAAUAUCACU - 91
• Evidence: experimental ; Illumina [2-3]

References

1. 
   "Bonnet E"
   (2007) None:


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553


3. PubMed ID: 23572382
   microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
   "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
   "Planta (2013) 238:91-105