Stem-loop mtr-MIR396b

Accession

MI0005622

Description

Medicago truncatula mtr-MIR396b precursor miRNA

Literature search

3 open access papers mention mtr-MIR396b
(8 sentences)

Sequence

uauucUUCCACAGCUUUCUUGAACUGcauccaaauugaguuccuuugcauugccauggccauuguuuugcgGUUCAAUAAAGCUGUGGGAAGaua
...((((((((((((((.((((((((((...((((......((...((...))...)).....)))))))))))))).)))))))).))))))..

Structure

uau      -        C          ucc    ugaguu  uuu  a 
   ucUUCC ACAGCUUU UUGAACUGca   aaau      cc   gc  
   |||||| |||||||| ||||||||||   ||||      ||   || u
   aGAAGG UGUCGAAA AACUUGgcgu   uuug      gg   cg  
-au      G        U          ---    -uuacc  uac  u 

Annotation confidence Not enough data

Genome context

chr4: 39798253-39798347 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR396b

Mature mtr-miR396b-5p

• Accession: MIMAT0011108
• Description: Medicago truncatula mtr-miR396b-5p mature miRNA
• Sequence: 6 - UUCCACAGCUUUCUUGAACUG - 26
• Evidence: experimental ; Illumina [2]

Mature mtr-miR396b-3p

• Accession: MIMAT0026732
• Description: Medicago truncatula mtr-miR396b-3p mature miRNA
• Sequence: 72 - GUUCAAUAAAGCUGUGGGAAG - 92
• Evidence: experimental ; Illumina [2]

References

1. 
   "Bonnet E"
   (2007) None:


2. PubMed ID: 23572382
   microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
   "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
   "Planta (2013) 238:91-105