Stem-loop ghr-MIR156a

Accession

MI0005638

Description

Gossypium hirsutum ghr-MIR156a precursor miRNA

Literature search

35 open access papers mention ghr-MIR156a
(144 sentences)

Sequence

1897536 reads, 39940.0 reads per million, 51 experiments

aagggaggUGACAGAAGAGAGUGAGCACacaggguacuuucuugcaugcuugagccuuucaugcuugaagcucUGCGUGCUCACCCUCUAUCUGucauccacuu
.(((..(((((((((((((.((((((((.((((((...(((..(((((...........)))))..))))))))).)))))))).)))).)))))))))..)))

Structure

a   ga         -    A        a      acu   uu     cuug 
 agg  ggUGACAGA AGAG GUGAGCAC cagggu   uuc  gcaug    a
 |||  ||||||||| |||| |||||||| ||||||   |||  |||||    g
 uuc  cuacuGUCU UCUC CACUCGUG GUcucg   aag  cguac    c
-   ac         A    C        C      ---   uu     uuuc 

Annotation confidence Medium

Genome context

Unknown

Mature ghr-miR156a-5p

• Accession: MIMAT0005806
• Description: Gossypium hirsutum ghr-miR156a-5p mature miRNA
• Sequence: 9 - UGACAGAAGAGAGUGAGCAC - 28
• Evidence: not_experimental

Mature ghr-miR156a-3p

• Accession: MIMAT0055282
• Description: Gossypium hirsutum ghr-miR156a-3p mature miRNA
• Sequence: 74 - UGCGUGCUCACCCUCUAUCUG - 94
• Evidence: experimental ; unknown

References

1. PubMed ID: 18603441
   Identification of micro-RNAs in cotton
   "Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S"
   "Plant Physiol Biochem (2008) 46:739-751