Stem-loop ghr-MIR156b

Accession

MI0005639

Description

Gossypium hirsutum ghr-MIR156b precursor miRNA

Literature search

34 open access papers mention ghr-MIR156b
(147 sentences)

Sequence

1895125 reads, 39904.0 reads per million, 51 experiments

ggUGACAGAAGAGAGUGAGCACacaggguacuuucuugcaugcuugagccuuucaugcuugaagcucUGCGUGCUCACCCUCUAUCUGucauccacuuuucucucucucucuc
(((((((((((((.((((((((.((((((...(((..(((((...........)))))..))))))))).)))))))).)))).)))))))))....................

Structure

--------------------         -    A        a      acu   uu     cuug 
                    ggUGACAGA AGAG GUGAGCAC cagggu   uuc  gcaug    a
                    ||||||||| |||| |||||||| ||||||   |||  |||||    g
                    cuacuGUCU UCUC CACUCGUG GUcucg   aag  cguac    c
cucucucucucucuuuucac         A    C        C      ---   uu     uuuc 

Annotation confidence Medium

Genome context

Unknown

Mature ghr-miR156b-5p

• Accession: MIMAT0005807
• Description: Gossypium hirsutum ghr-miR156b-5p mature miRNA
• Sequence: 3 - UGACAGAAGAGAGUGAGCAC - 22
• Evidence: not_experimental

Mature ghr-miR156b-3p

• Accession: MIMAT0055283
• Description: Gossypium hirsutum ghr-miR156b-3p mature miRNA
• Sequence: 68 - UGCGUGCUCACCCUCUAUCUG - 88
• Evidence: experimental ; unknown

References

1. PubMed ID: 18603441
   Identification of micro-RNAs in cotton
   "Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S"
   "Plant Physiol Biochem (2008) 46:739-751