Stem-loop ghr-MIR156c

Accession

MI0005640

Description

Gossypium hirsutum ghr-MIR156c precursor miRNA

Literature search

34 open access papers mention ghr-MIR156c
(139 sentences)

Sequence

2433 reads, 104.0 reads per million, 43 experiments

ggUGUCAGAAGAGAGUGAGCACacaggguucuuuguagcaugcuugagccuuucaugcuagaagcuauguguGCUCACCCUCUAUCUGUCAUCcacu
((((.((((((((.(((((((((((.(((...((.(((((((...........))))))).))))).))))))))))).)))).)))).))))....

Structure

----    U    -    A           g   ucu  g       cuug 
    ggUG CAGA AGAG GUGAGCACaca ggu   uu uagcaug    a
    |||| |||| |||| ||||||||||| |||   || |||||||    g
    CUAC GUCU UCUC CACUCGugugu ucg   aa aucguac    c
ucac    U    A    C           a   ---  g       uuuc 

Annotation confidence High

Genome context

Unknown

Mature ghr-miR156c-5p

• Accession: MIMAT0005808
• Description: Gossypium hirsutum ghr-miR156c-5p mature miRNA
• Sequence: 3 - UGUCAGAAGAGAGUGAGCAC - 22
• Evidence: not_experimental

Mature ghr-miR156c-3p

• Accession: MIMAT0055284
• Description: Gossypium hirsutum ghr-miR156c-3p mature miRNA
• Sequence: 73 - GCUCACCCUCUAUCUGUCAUC - 93
• Evidence: experimental ; unknown

References

1. PubMed ID: 18603441
   Identification of micro-RNAs in cotton
   "Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S"
   "Plant Physiol Biochem (2008) 46:739-751