Stem-loop ghr-MIR156d

Accession

MI0005641

Description

Gossypium hirsutum ghr-MIR156d precursor miRNA

Literature search

34 open access papers mention ghr-MIR156d
(137 sentences)

Sequence

2724976 reads, 59609.0 reads per million, 51 experiments

gagagguuUGACAGAAGAGAGUGAGCACacgcaggcagauuguaugaaaggccauaccuuugcccgccgugUGCUCACUUCUCUUCUGUCAGCuua
...(((((.(((((((((((((((((((((((.((((((..(((((......))))).)))))).).))))))))))).)))))))))))))))).

Structure

gag     U           -           - a      uu     aa 
   agguu GACAGAAGAGA GUGAGCACacg c ggcaga  guaug  a
   ||||| ||||||||||| ||||||||||| | ||||||  |||||   
   uuCGA CUGUCUUCUCU CACUCGUgugc g ccguuu  cauac  g
--a     -           U           c c      -c     cg 

Annotation confidence High

Genome context

Unknown

Mature ghr-miR156d-5p

• Accession: MIMAT0005809
• Description: Gossypium hirsutum ghr-miR156d-5p mature miRNA
• Sequence: 9 - UGACAGAAGAGAGUGAGCAC - 28
• Evidence: not_experimental

Mature ghr-miR156d-3p

• Accession: MIMAT0055285
• Description: Gossypium hirsutum ghr-miR156d-3p mature miRNA
• Sequence: 72 - UGCUCACUUCUCUUCUGUCAGC - 93
• Evidence: experimental ; unknown

References

1. PubMed ID: 18603441
   Identification of micro-RNAs in cotton
   "Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S"
   "Plant Physiol Biochem (2008) 46:739-751