Stem-loop gra-MIR157a

Accession

MI0005642

Description

Gossypium raimondii gra-MIR157a precursor miRNA

Literature search

2 open access papers mention gra-MIR157a
(6 sentences)

Sequence

96200 reads, 10153.0 reads per million, 13 experiments

guugUUGACAGAAGAUAGAGAGCACagaugauggugugcaauuaggagucuugaagcaaugcaucccacuccuuuguGCUCUUUAUGCUUCUGUCAUCAcc
..((.(((((((((((((((((((((((.(((((.(((((.(((((...))))).....))))).))).)).)))))))))))))).))))))))).))..

Structure

gu  U         -              u  -   u     ----a     a 
  ug UGACAGAAG AUAGAGAGCACaga ga ugg gugca     uuagg  
  || ||||||||| |||||||||||||| || ||| |||||     ||||| g
  AC ACUGUCUUC UAUUUCUCGuguuu cu acc uacgu     aguuc  
cc  U         G              c  c   c     aacga     u 

Annotation confidence High

Genome context

chr6: 21468805-21468905 [-]

Mature gra-miR157a-5p

• Accession: MIMAT0005810
• Description: Gossypium raimondii gra-miR157a-5p mature miRNA
• Sequence: 5 - UUGACAGAAGAUAGAGAGCAC - 25
• Evidence: not_experimental

Mature gra-miR157a-3p

• Accession: MIMAT0055345
• Description: Gossypium raimondii gra-miR157a-3p mature miRNA
• Sequence: 78 - GCUCUUUAUGCUUCUGUCAUCA - 99
• Evidence: experimental ; unknown

References

1. PubMed ID: 18603441
   Identification of micro-RNAs in cotton
   "Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S"
   "Plant Physiol Biochem (2008) 46:739-751