Stem-loop gra-MIR157b

Accession

MI0005643

Description

Gossypium raimondii gra-MIR157b precursor miRNA

Literature search

1 open access papers mention gra-MIR157b
(5 sentences)

Sequence

100201 reads, 10689.0 reads per million, 13 experiments

guugUUGACAGAAGAUAGAGAGCACagaugaugguguugccuaugugcaugcaucccacuccuuuguGCUCUCUAUGCUUCUGUCAUCauc
..((.(((((((((((((((((((((((.(((((((((((......))).)))..))).)).)))))))))))))).))))))))).))..

Structure

gu  U         -              u  -   --   -   cu 
  ug UGACAGAAG AUAGAGAGCACaga ga ugg  ugu ugc  a
  || ||||||||| |||||||||||||| || |||  ||| |||   
  aC ACUGUCUUC UAUCUCUCGuguuu cu acc  acg acg  u
cu  U         G              c  c   cu   u   ug 

Annotation confidence High

Genome context

chr8: 56322713-56322803 [-]

Mature gra-miR157b-5p

• Accession: MIMAT0005811
• Description: Gossypium raimondii gra-miR157b-5p mature miRNA
• Sequence: 5 - UUGACAGAAGAUAGAGAGCAC - 25
• Evidence: not_experimental

Mature gra-miR157b-3p

• Accession: MIMAT0055346
• Description: Gossypium raimondii gra-miR157b-3p mature miRNA
• Sequence: 68 - GCUCUCUAUGCUUCUGUCAUC - 88
• Evidence: experimental ; unknown

References

1. PubMed ID: 18603441
   Identification of micro-RNAs in cotton
   "Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S"
   "Plant Physiol Biochem (2008) 46:739-751