Stem-loop ghr-MIR162a

Accession

MI0005644

Description

Gossypium hirsutum ghr-MIR162a precursor miRNA

Literature search

12 open access papers mention ghr-MIR162a
(24 sentences)

Sequence

109684 reads, 3067.0 reads per million, 51 experiments

uuuuuagcguugggguaaagacacUGGAGGCAGCGGUUCAUCGAUCUCuuccugagaauuuuguugugagaauaacacaaauacaugaaucgaUCGAUAAACCUCUGCAUCCAGcgccuuaacucuccaugaaguuuuauguuaguua
...((((((((((((..(((.(.(((((.((((.((((.(((((((..(((.((...((((((((((....)))))).)))).)).)))..))))))).)))).)))).))))).).)))....))))).........)))))))...

Structure

uuu       ---------     --ua   a a     G    C    C       UC   c  aga    -      g 
   uuagcgu         ugggg    aag c cUGGA GCAG GGUU AUCGAUC  uuc ug   auuu uguugu a
   |||||||         |||||    ||| | ||||| |||| |||| |||||||  ||| ||   |||| ||||||  
   gauugua         accuc    uuc g GACCU CGUC CCAA UAGCUag  aag ac   uaaa acaaua g
auu       uuuugaagu     ucaa   c c     A    U    A       cu   u  --a    c      a 

Annotation confidence High

Genome context

Unknown

Mature ghr-miR162a-5p

• Accession: MIMAT0055286
• Description: Gossypium hirsutum ghr-miR162a-5p mature miRNA
• Sequence: 25 - UGGAGGCAGCGGUUCAUCGAUCUC - 48
• Evidence: experimental ; unknown

Mature ghr-miR162a-3p

• Accession: MIMAT0005812
• Description: Gossypium hirsutum ghr-miR162a-3p mature miRNA
• Sequence: 94 - UCGAUAAACCUCUGCAUCCAG - 114
• Evidence: not_experimental

References

1. PubMed ID: 18603441
   Identification of micro-RNAs in cotton
   "Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S"
   "Plant Physiol Biochem (2008) 46:739-751